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L1_007_000M1_scaffold_338

Search features with annotation key words

Displaying items 1-30 of 87 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_338_1
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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187..441
-----------------
DNA (255bp)
protein (85aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6XD32_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14261.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L1_007_000M1_scaffold_338_2
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

636..1514
-----------------
DNA (879bp)
protein (293aa)
Predicted dinucleotide-utilizing enzyme (EC:1.4.1.21)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=K6A2E4_9PORP
Homoserine dehydrogenase NAD binding domain protein {ECO:0000313|EMBL:CDD14260.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L1_007_000M1_scaffold_338_3
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1497..2381)
-----------------
DNA (885bp)
protein (295aa)
D-isomer specific 2-hydroxyacid dehydrogenase catalytic domain protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X541_9PORP
D-isomer specific 2-hydroxyacid dehydrogenase catalytic domain protein {ECO:0000313|EMBL:CDD14259.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Lactate dehydrogenase and related dehydrogenases
L1_007_000M1_scaffold_338_4
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2492..3262
-----------------
DNA (771bp)
protein (257aa)
Tat pathway signal sequence domain protein n=4 Tax=Parabacteroides RepID=A7ABD4_9PORP
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:EDN87884.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
Tat pathway signal sequence domain-containing protein
L1_007_000M1_scaffold_338_5
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3985..5640)
-----------------
DNA (1656bp)
protein (552aa)
Amino acid permease n=2 Tax=Parabacteroides merdae RepID=A7ABD5_9PORP
Amino acid permease {ECO:0000313|EMBL:EDN87885.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
cationic amino acid transporter
L1_007_000M1_scaffold_338_6
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5707..6441)
-----------------
DNA (735bp)
protein (245aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K6A0Y3_9PORP
Oxidoreductase short chain dehydrogenase/reductase family protein {ECO:0000313|EMBL:CDD14256.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
oxidoreductase
L1_007_000M1_scaffold_338_7
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

6531..8948
-----------------
DNA (2418bp)
protein (806aa)
TonB-dependent receptor n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WY48_9PORP
TonB-dependent receptor {ECO:0000313|EMBL:CDD14255.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
TonB-dependent receptor
L1_007_000M1_scaffold_338_8
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9053..9595
-----------------
DNA (543bp)
protein (181aa)
RNA polymerase sigma-70 factor n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X535_9PORP
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:CDD14254.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
RNA polymerase ECF-type sigma factor
L1_007_000M1_scaffold_338_9
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9771..10748
-----------------
DNA (978bp)
protein (326aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K5ZNV8_9PORP
Sigma factor regulatory protein FecR/PupR family {ECO:0000313|EMBL:CDD14253.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
anti-sigma factor
L1_007_000M1_scaffold_338_10
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11023..14427
-----------------
DNA (3405bp)
protein (1135aa)
SusC/RagA family TonB-linked outer membrane protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K6A1L4_9PORP
SusC/RagA family TonB-linked outer membrane protein {ECO:0000313|EMBL:EKN17435.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
hypothetical protein
L1_007_000M1_scaffold_338_11
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

14440..16140
-----------------
DNA (1701bp)
protein (567aa)
SusD family protein n=3 Tax=Parabacteroides merdae RepID=A7ABE3_9PORP
SusD family protein {ECO:0000313|EMBL:EDN87893.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L1_007_000M1_scaffold_338_12
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16220..17614
-----------------
DNA (1395bp)
protein (465aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K5YTB9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN17437.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
glucose-inhibited division protein A
L1_007_000M1_scaffold_338_13
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

17655..19562
-----------------
DNA (1908bp)
protein (636aa)
Uncharacterized protein n=4 Tax=Parabacteroides RepID=A7ABE5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87895.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit
L1_007_000M1_scaffold_338_14
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19579..21438
-----------------
DNA (1860bp)
protein (620aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K5ZNW4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD11901.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
pyridine nucleotide-disulfide oxidoreductase
L1_007_000M1_scaffold_338_15
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

21559..23010
-----------------
DNA (1452bp)
protein (484aa)
Hydrolase alpha/beta domain protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y0A5_9PORP
Hydrolase alpha/beta domain protein {ECO:0000313|EMBL:CDD11907.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
peptidase S9
L1_007_000M1_scaffold_338_16
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

23032..23865
-----------------
DNA (834bp)
protein (278aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WL79_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD11908.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
putative exported alpha-L-fucosidase protein
L1_007_000M1_scaffold_338_17
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

24446..28399
-----------------
DNA (3954bp)
protein (1318aa)
Divergent AAA domain protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WY92_9PORP
Divergent AAA domain protein {ECO:0000313|EMBL:CDD11909.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
ATPase AAA
L1_007_000M1_scaffold_338_18
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(28396..29556)
-----------------
DNA (1161bp)
protein (387aa)
Transporter major facilitator family protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WRA2_9PORP
Transporter major facilitator family protein {ECO:0000313|EMBL:CDD11910.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L1_007_000M1_scaffold_338_19
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

29787..32153
-----------------
DNA (2367bp)
protein (789aa)
Efflux ABC transporter permease protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X6L3_9PORP
Efflux ABC transporter permease protein {ECO:0000313|EMBL:CDD11911.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L1_007_000M1_scaffold_338_20
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

32187..33737
-----------------
DNA (1551bp)
protein (517aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y0A9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD11912.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
ABC transporter permease
L1_007_000M1_scaffold_338_21
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

33758..34558
-----------------
DNA (801bp)
protein (267aa)
Efflux ABC transporter permease protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WL88_9PORP
Efflux ABC transporter permease protein {ECO:0000313|EMBL:CDD11913.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
ABC transporter permease
L1_007_000M1_scaffold_338_22
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

34738..35418
-----------------
DNA (681bp)
protein (227aa)
Uncharacterized protein n=4 Tax=Parabacteroides RepID=K5YTD1_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN17452.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
ABC transporter ATP-binding protein
L1_007_000M1_scaffold_338_23
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

35541..37871
-----------------
DNA (2331bp)
protein (777aa)
Efflux ABC transporter permease protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WRA7_9PORP
Efflux ABC transporter permease protein {ECO:0000313|EMBL:CDD11915.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
ABC transporter permease
L1_007_000M1_scaffold_338_24
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(37879..38730)
-----------------
DNA (852bp)
protein (284aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X6L7_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD11916.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L1_007_000M1_scaffold_338_25
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(39322..41091)
-----------------
DNA (1770bp)
protein (590aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=2 Tax=Parabacteroides merdae RepID=A7AFS8_9PORP
two-component system sensor histidine kinase
L1_007_000M1_scaffold_338_26
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(41212..41898)
-----------------
DNA (687bp)
protein (229aa)
Response regulator receiver domain protein n=3 Tax=Parabacteroides RepID=A7AFS9_9PORP
Response regulator receiver domain protein {ECO:0000313|EMBL:CDD13705.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
two-component system response regulator
L1_007_000M1_scaffold_338_27
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(42003..42848)
-----------------
DNA (846bp)
protein (282aa)
Histidinol phosphate phosphatase HisJ family protein n=2 Tax=Parabacteroides merdae RepID=K6BD64_9PORP
Histidinol phosphate phosphatase HisJ family protein {ECO:0000313|EMBL:EKN17457.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
histidinol-phosphatase
L1_007_000M1_scaffold_338_28
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(42992..44182)
-----------------
DNA (1191bp)
protein (397aa)
2-amino-3-ketobutyrate coenzyme A ligase {ECO:0000256|HAMAP-Rule:MF_00985}; Short=AKB ligase {ECO:0000256|HAMAP-Rule:MF_00985};; EC=2.3.1.29 {ECO:0000256|HAMAP-Rule:MF_00985};; Glycine acetyltransferase {ECO:0000256|HAMAP-Rule:MF_00985}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
2-amino-3-ketobutyrate CoA ligase (EC:2.3.1.29)
Glycine C-acetyltransferase n=3 Tax=Parabacteroides RepID=A7AFT1_9PORP
L1_007_000M1_scaffold_338_29
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(44222..44359)
-----------------
DNA (138bp)
protein (46aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=K5ZNY2_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13379.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L1_007_000M1_scaffold_338_30
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

44423..45376
-----------------
DNA (954bp)
protein (318aa)
NAD dependent epimerase/dehydratase family protein n=4 Tax=Parabacteroides RepID=A7AFT2_9PORP
NAD dependent epimerase/dehydratase family protein {ECO:0000313|EMBL:CDD13380.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
epimerase/reductase
Displaying items 1-30 of 87 in total

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