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L1_007_000M1_scaffold_3960

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_3960_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(457..1350)
DNA (894bp) protein (298aa)
cysteine synthase (EC:2.5.1.47)
Pyridoxal-phosphate dependent protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLH6_9FIRM
Pyridoxal-phosphate dependent protein {ECO:0000313|EMBL:EFB76442.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_3960_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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1674..2075
DNA (402bp) protein (134aa)
Helix-turn-helix protein, YlxM/p13 family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLH5_9FIRM
UPF0122 protein SUBVAR_05360 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_3960_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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2065..3408
DNA (1344bp) protein (448aa)
Signal recognition particle protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLH4_9FIRM
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
signal recognition particle subunit FFH/SRP54 (srp54)
L1_007_000M1_scaffold_3960_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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3531..3770
DNA (240bp) protein (80aa)
30S ribosomal protein S16 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLH3_9FIRM
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
SSU ribosomal protein S16P
L1_007_000M1_scaffold_3960_5

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3790..4023
DNA (234bp) protein (78aa)
RNA-binding protein (KH domain) (Fragment) n=1 Tax=human gut metagenome RepID=K1T244_9ZZZZ
RNA-binding protein (KH domain) {ECO:0000313|EMBL:EKC66972.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
RNA-binding protein (KH domain)
L1_007_000M1_scaffold_3960_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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4114..4644
DNA (531bp) protein (177aa)
Ribosome maturation factor RimM n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLH1_9FIRM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00055369}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
16S rRNA processing protein RimM
L1_007_000M1_scaffold_3960_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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4648..5886
DNA (1239bp) protein (413aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|SAAS:SAAS00014918}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|SAAS:SAAS00014917};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLH0_9FIRM
tRNA (guanine-N1)-methyltransferase
L1_007_000M1_scaffold_3960_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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6158..6421
DNA (264bp) protein (88aa)
Phosphocarrier, HPr family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLG9_9FIRM
Phosphocarrier, HPr family {ECO:0000313|EMBL:EFB76435.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Phosphotransferase System HPr (HPr) Family
L1_007_000M1_scaffold_3960_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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6527..8371
DNA (1845bp) protein (615aa)
UvrABC system protein C n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLG8_9FIRM
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Excinuclease ABC subunit C
L1_007_000M1_scaffold_3960_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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8728..9279
DNA (552bp) protein (184aa)
RNA methyltransferase, RsmD family {ECO:0000313|EMBL:EFB75838.1}; EC=2.1.1.- {ECO:0000313|EMBL:EFB75838.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
RNA methyltransferase, RsmD family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMQ3_9FIRM
RNA methyltransferase, RsmD family
L1_007_000M1_scaffold_3960_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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9276..9761
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMQ2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75837.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_3960_12

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10053..10469
DNA (417bp) protein (139aa)
Cell division protein MraZ (Fragment) n=1 Tax=human gut metagenome RepID=K1SYZ5_9ZZZZ
Cell division protein MraZ {ECO:0000313|EMBL:EKC65887.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
MraZ protein
L1_007_000M1_scaffold_3960_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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10665..11588
DNA (924bp) protein (308aa)
Ribosomal RNA small subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000256|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01007}; rRNA (cytosine-N(4)-)-methyltransferase RsmH {ECO:0000256|HAMAP-Rule:MF_01007}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
S-adenosyl-methyltransferase MraW (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase H n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMP9_9FIRM
L1_007_000M1_scaffold_3960_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11693..12169
DNA (477bp) protein (159aa)
Cell division protein FtsL n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMP8_9FIRM
Cell division protein FtsL {ECO:0000313|EMBL:EFB75833.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ftsL; Putative cell division protein FtsL
L1_007_000M1_scaffold_3960_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12347..14977
DNA (2631bp) protein (877aa)
Penicillin-binding protein, transpeptidase domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMP7_9FIRM
Penicillin-binding protein, transpeptidase domain protein {ECO:0000313|EMBL:EFB75832.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Cell division protein FtsI/penicillin-binding protein 2
L1_007_000M1_scaffold_3960_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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15055..16434
DNA (1380bp) protein (460aa)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase {ECO:0000256|RuleBase:RU004136}; EC=6.3.2.10 {ECO:0000256|RuleBase:RU004136};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC:6.3.2.10)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMP6_9FIRM
L1_007_000M1_scaffold_3960_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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16459..17472
DNA (1014bp) protein (338aa)
Phospho-N-acetylmuramoyl-pentapeptide-transferase {ECO:0000256|HAMAP-Rule:MF_00038}; EC=2.7.8.13 {ECO:0000256|HAMAP-Rule:MF_00038};; UDP-MurNAc-pentapeptide phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00038}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC:2.7.8.13)
Phospho-N-acetylmuramoyl-pentapeptide-transferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMP5_9FIRM
L1_007_000M1_scaffold_3960_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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17500..18747
DNA (1248bp) protein (416aa)
LPXTG-motif cell wall anchor domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMP4_9FIRM
LPXTG-motif cell wall anchor domain protein {ECO:0000313|EMBL:EFB75829.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Bacterial cell division membrane protein
L1_007_000M1_scaffold_3960_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18961..20082
DNA (1122bp) protein (374aa)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082867}; EC=2.4.1.227 {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082938};; Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase {ECO:0000256|HAMAP-Rule:MF_00033}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC:2.4.1.227)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMP3_9FIRM
Displaying 19 items

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