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L1_007_000M1_scaffold_2004

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_2004_1

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529..1308
DNA (780bp) protein (260aa)
pantothenate kinase, type III (EC:2.7.1.33)
Type III pantothenate kinase n=2 Tax=human gut metagenome RepID=K1U0K2_9ZZZZ
Type III pantothenate kinase {ECO:0000313|EMBL:EKC78822.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_007_000M1_scaffold_2004_2

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comp(1426..3471)
DNA (2046bp) protein (682aa)
Phosphohydrolase (Fragment) n=1 Tax=human gut metagenome RepID=K1TN33_9ZZZZ
Phosphohydrolase {ECO:0000313|EMBL:EKC60751.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Calcineurin-like phosphoesterase
L1_007_000M1_scaffold_2004_3
Clostridium sp. L2-50, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3648..4829)
DNA (1182bp) protein (394aa)
YibE/F-like protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VF95_9CLOT
YibE/F-like protein {ECO:0000313|EMBL:EDO57846.1}; TaxID=411489 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. L2-50.;"
hypothetical protein
L1_007_000M1_scaffold_2004_4
unknown

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comp(4852..5190)
DNA (339bp) protein (113aa)

This feature has no annotations

L1_007_000M1_scaffold_2004_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5504..6349)
DNA (846bp) protein (282aa)
PSP1 C-terminal domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQC6_9FIRM
PSP1 C-terminal domain protein {ECO:0000313|EMBL:EFB75108.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Uncharacterized homolog of PSP1
L1_007_000M1_scaffold_2004_6

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comp(6401..7321)
DNA (921bp) protein (307aa)
DNA polymerase III, delta' subunit (Fragment) n=1 Tax=human gut metagenome RepID=K1UY72_9ZZZZ
DNA polymerase III, delta' subunit {ECO:0000313|EMBL:EKC76506.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L1_007_000M1_scaffold_2004_7

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comp(7321..7644)
DNA (324bp) protein (108aa)
Protein containing DUF970 n=3 Tax=human gut metagenome RepID=K1U320_9ZZZZ
Protein containing DUF970 {ECO:0000313|EMBL:EKC72795.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L1_007_000M1_scaffold_2004_8

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comp(7801..8451)
DNA (651bp) protein (217aa)
Uncharacterized protein (Fragment) n=1 Tax=human gut metagenome RepID=K1V8S2_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC80376.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Rhomboid family.
L1_007_000M1_scaffold_2004_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8982..9692)
DNA (711bp) protein (237aa)
Methyltransferase, YaeB family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRC1_9FIRM
Methyltransferase, YaeB family {ECO:0000313|EMBL:EFB74764.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
conserved hypothetical protein TIGR00104
L1_007_000M1_scaffold_2004_10
Gillisia limnaea, Gillisia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(9732..10715)
DNA (984bp) protein (328aa)
glycosyltransferase n=1 Tax=Lachnospiraceae bacterium NK4A179 RepID=UPI0003B74202
Putative LPS biosynthesis related glycosyltransferase {ECO:0000313|EMBL:EHQ01430.1}; TaxID=865937 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Gillisia.;" source="Gillisia limnaea DSM 15749.;"
alpha-1,3-fucosyltransferase
L1_007_000M1_scaffold_2004_11

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comp(10717..11262)
DNA (546bp) protein (182aa)
NTP pyrophosphohydrolases including oxidative damage repair enzymes (EC:3.6.1.13)
MutT/NUDIX family protein (Fragment) n=1 Tax=human gut metagenome RepID=K1U7L3_9ZZZZ
MutT/NUDIX family protein {ECO:0000313|EMBL:EKC67461.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_007_000M1_scaffold_2004_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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11836..14424
DNA (2589bp) protein (863aa)
Pyruvate synthase {ECO:0000313|EMBL:EFB74765.1}; EC=1.2.7.1 {ECO:0000313|EMBL:EFB74765.1};; Flags: Fragment;; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric (EC:1.2.7.-)
Pyruvate synthase (Fragment) n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRC2_9FIRM
L1_007_000M1_scaffold_2004_13

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14669..15229
DNA (561bp) protein (187aa)
pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric (EC:1.2.7.-)
Pyruvate:ferredoxin (Flavodoxin) oxidoreductase n=1 Tax=human gut metagenome RepID=K1SG37_9ZZZZ
Pyruvate:ferredoxin (Flavodoxin) oxidoreductase {ECO:0000313|EMBL:EKC46396.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_007_000M1_scaffold_2004_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(15683..18268)
DNA (2586bp) protein (862aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRM5_9FIRM
L1_007_000M1_scaffold_2004_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18616..20586)
DNA (1971bp) protein (657aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRM7_9FIRM
L1_007_000M1_scaffold_2004_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20766..21038)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRM8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB74645.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_2004_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21458..22552)
DNA (1095bp) protein (365aa)
DNA replication and repair protein RecF n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRM9_9FIRM
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
recF protein
L1_007_000M1_scaffold_2004_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22552..22767)
DNA (216bp) protein (72aa)
S4 domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRN0_9FIRM
S4 domain protein {ECO:0000313|EMBL:EFB74647.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_2004_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22772..23881)
DNA (1110bp) protein (370aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
DNA polymerase III subunit beta (EC:2.7.7.7)
DNA polymerase III subunit beta n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRN1_9FIRM
L1_007_000M1_scaffold_2004_20
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24365..25681)
DNA (1317bp) protein (439aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRN4_9FIRM
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
chromosomal replication initiator protein DnaA
L1_007_000M1_scaffold_2004_21
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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26370..26504
DNA (135bp) protein (45aa)
50S ribosomal protein L34 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRN5_9FIRM
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391, ECO:0000256|RuleBase:RU000566}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
50S ribosomal protein L34
L1_007_000M1_scaffold_2004_22

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26747..27139
DNA (393bp) protein (131aa)
ribonuclease P protein component, eubacterial (EC:3.1.26.5)
Ribonuclease P protein component n=1 Tax=human gut metagenome RepID=K1U903_9ZZZZ
Ribonuclease P protein component {ECO:0000313|EMBL:EKC78648.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_007_000M1_scaffold_2004_23
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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27136..27399
DNA (264bp) protein (88aa)
Putative membrane protein insertion efficiency factor n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRN8_9FIRM
Putative membrane protein insertion efficiency factor {ECO:0000256|HAMAP-Rule:MF_00386, ECO:0000256|SAAS:SAAS00100919}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_2004_24
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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27714..28778
DNA (1065bp) protein (355aa)
Membrane protein insertase, YidC/Oxa1 family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRP0_9FIRM
Membrane protein insertase, YidC/Oxa1 family {ECO:0000313|EMBL:EFB74657.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
membrane protein insertase, YidC/Oxa1 family, C-terminal domain
L1_007_000M1_scaffold_2004_25
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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28809..29921
DNA (1113bp) protein (371aa)
Predicted RNA-binding protein n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4JZG3_9FIRM
Predicted RNA-binding protein
Predicted RNA-binding protein {ECO:0000313|EMBL:CBK99412.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L1_007_000M1_scaffold_2004_26

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30596..31366
DNA (771bp) protein (257aa)
3-dehydroquinate dehydratase, type I (EC:4.2.1.10)
3-dehydroquinate dehydratase, type I (Fragment) n=1 Tax=human gut metagenome RepID=K1TMP4_9ZZZZ
3-dehydroquinate dehydratase, type I {ECO:0000313|EMBL:EKC74412.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_007_000M1_scaffold_2004_27
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(31567..32874)
DNA (1308bp) protein (436aa)
Serine--tRNA ligase {ECO:0000313|EMBL:EFB74574.1}; EC=6.1.1.11 {ECO:0000313|EMBL:EFB74574.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
seryl-tRNA synthetase (EC:6.1.1.11)
Serine--tRNA ligase n=2 Tax=root RepID=D1PRV1_9FIRM
L1_007_000M1_scaffold_2004_28
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(32944..33864)
DNA (921bp) protein (307aa)
Stage 0 sporulation protein J n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRV2_9FIRM
Stage 0 sporulation protein J {ECO:0000313|EMBL:EFB74575.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
chromosome segregation DNA-binding protein
L1_007_000M1_scaffold_2004_29
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(33901..34668)
DNA (768bp) protein (256aa)
CobQ/CobB/MinD/ParA nucleotide binding domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRV3_9FIRM
CobQ/CobB/MinD/ParA nucleotide binding domain protein {ECO:0000313|EMBL:EFB74576.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
cobyrinic acid ac-diamide synthase
L1_007_000M1_scaffold_2004_30
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(35567..36487)
DNA (921bp) protein (307aa)
ParB-like protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRV4_9FIRM
ParB-like protein {ECO:0000313|EMBL:EFB74577.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ParB-like partition proteins
Displaying items 1-30 of 40 in total

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