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L1_007_000M1_scaffold_2154

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_2154_1
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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1383..2735
DNA (1353bp) protein (451aa)
MATE efflux family protein n=2 Tax=Roseburia RepID=C0FNR7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY30100.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
putative efflux protein, MATE family
L1_007_000M1_scaffold_2154_2
unknown

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comp(2647..2907)
DNA (261bp) protein (87aa)

This feature has no annotations

L1_007_000M1_scaffold_2154_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3417..4979)
DNA (1563bp) protein (521aa)
Beta-xylosidase (EC:3.2.1.55)
Glycosyl hydrolase, family 43 n=2 Tax=root RepID=D1PQQ6_9FIRM
Glycosyl hydrolase, family 43 {ECO:0000313|EMBL:EFB74921.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_2154_4

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comp(5154..6041)
DNA (888bp) protein (296aa)
Binding-protein-dependent transport system inner membrane component n=1 Tax=human gut metagenome RepID=K1VAB1_9ZZZZ
Binding-protein-dependent transport system inner membrane component {ECO:0000313|EMBL:EKC80891.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
ABC-type sugar transport system, permease component
L1_007_000M1_scaffold_2154_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6055..6978)
DNA (924bp) protein (308aa)
ABC transporter, permease protein n=2 Tax=root RepID=D1PQQ8_9FIRM
ABC transporter, permease protein {ECO:0000313|EMBL:EFB74923.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-)
L1_007_000M1_scaffold_2154_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7143..8795)
DNA (1653bp) protein (551aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQQ9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB74924.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)
L1_007_000M1_scaffold_2154_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9095..10702)
DNA (1608bp) protein (536aa)
Response regulator receiver domain protein n=2 Tax=root RepID=D1PQR0_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:EFB74925.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_2154_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10704..12470)
DNA (1767bp) protein (589aa)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQR1_9FIRM
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein {ECO:0000313|EMBL:EFB74926.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_2154_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12658..13350
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQR3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB74928.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_2154_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13649..14809)
DNA (1161bp) protein (387aa)
Glycosyl hydrolase family 8 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQR5_9FIRM
Glycosyl hydrolase family 8 {ECO:0000313|EMBL:EFB74930.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
xylanase Y
L1_007_000M1_scaffold_2154_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15519..16379)
DNA (861bp) protein (287aa)
Transcriptional regulator, AraC family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQS2_9FIRM
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EFB74937.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
AraC family transcriptional regulator
L1_007_000M1_scaffold_2154_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16379..16762)
DNA (384bp) protein (128aa)
Transcriptional regulator, AraC family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQS2_9FIRM
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EFB74937.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
two-component response regulator
L1_007_000M1_scaffold_2154_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16797..17690)
DNA (894bp) protein (298aa)
ROK family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQS3_9FIRM
ROK family protein {ECO:0000313|EMBL:EFB74938.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
putative NagC family transcriptional regulator
L1_007_000M1_scaffold_2154_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18230..18415
DNA (186bp) protein (62aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQS5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB74940.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_2154_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18451..19941
DNA (1491bp) protein (497aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQS6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB74941.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L-fucose isomerase and related proteins
L1_007_000M1_scaffold_2154_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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19967..20626
DNA (660bp) protein (220aa)
Probable transaldolase {ECO:0000256|HAMAP-Rule:MF_00494}; EC=2.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00494};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Probable transaldolase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQS7_9FIRM
transaldolase
L1_007_000M1_scaffold_2154_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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20619..21479
DNA (861bp) protein (287aa)
transketolase subunit A (EC:2.2.1.1)
Transketolase, thiamine diphosphate binding domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSK3_9FIRM
Transketolase, thiamine diphosphate binding domain protein {ECO:0000313|EMBL:EFB74329.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_2154_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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21476..22414
DNA (939bp) protein (313aa)
Transketolase, C-terminal subunit (EC:2.2.1.1)
Transketolase, pyridine binding domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSK2_9FIRM
Transketolase, pyridine binding domain protein {ECO:0000313|EMBL:EFB74328.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_2154_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22416..22847
DNA (432bp) protein (144aa)
Ribose-5-phosphate isomerase B {ECO:0000313|EMBL:EFB74327.1}; EC=5.3.1.6 {ECO:0000313|EMBL:EFB74327.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ribose-5-phosphate isomerase (EC:5.3.1.6)
Ribose-5-phosphate isomerase B n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSK1_9FIRM
L1_007_000M1_scaffold_2154_20

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22847..23503
DNA (657bp) protein (219aa)
Ribulose-phosphate 3-epimerase {ECO:0000313|EMBL:EKC72109.1}; EC=5.1.3.1 {ECO:0000313|EMBL:EKC72109.1};; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
rpe; ribulose-phosphate 3-epimerase Rpe (EC:5.1.3.1)
Putative ribulose-phosphate 3-epimerase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSK0_9FIRM
L1_007_000M1_scaffold_2154_21
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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23504..23734
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YTM4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM43982.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
hypothetical protein
L1_007_000M1_scaffold_2154_22

Not on your lists

24512..25015
DNA (504bp) protein (168aa)
RNA polymerase, sigma-24 subunit, ECF subfamily (Fragment) n=1 Tax=human gut metagenome RepID=K1SH91_9ZZZZ
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EKC54809.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
sigma factor-like protein
L1_007_000M1_scaffold_2154_23

Not on your lists

25012..25152
DNA (141bp) protein (47aa)
Uncharacterized protein n=1 Tax=human gut metagenome RepID=K1UID5_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC79784.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Displaying 23 items

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