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L1_007_000M1_scaffold_356

Search features with annotation key words

Displaying items 1-30 of 179 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_356_1
Roseburia sp. CAG:182, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

325..1329
DNA (1005bp) protein (335aa)
cation-transporting ATPase, E1-E2 (EC:3.6.3.8)
Alpha/beta hydrolase n=1 Tax=Roseburia sp. CAG:182 RepID=R7R0J2_9FIRM
Alpha/beta hydrolase {ECO:0000313|EMBL:CDF43433.1}; TaxID=1262942 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:182.;"
L1_007_000M1_scaffold_356_2
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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1417..2682
DNA (1266bp) protein (422aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RVQ9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL67474.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
Site-specific recombinases, DNA invertase Pin homologs
L1_007_000M1_scaffold_356_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2487..3242)
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJP6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76994.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Putative peptidoglycan-binding domain-containing protein
L1_007_000M1_scaffold_356_4
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3315..4181
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Clostridium sp. KLE 1755 RepID=U2CSG3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI70241.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
ATPase AAA
L1_007_000M1_scaffold_356_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4257..5120)
DNA (864bp) protein (288aa)
Fructose-1,6-bisphosphate aldolase, class II {ECO:0000313|EMBL:EFB76995.1}; EC=4.1.2.13 {ECO:0000313|EMBL:EFB76995.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist (EC:4.1.2.13)
Fructose-1,6-bisphosphate aldolase, class II n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJP7_9FIRM
L1_007_000M1_scaffold_356_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5706..6506
DNA (801bp) protein (267aa)
rRNA methylase, putative, group 3 (EC:2.1.1.-)
RNA methyltransferase, TrmH family, group 3 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJQ0_9FIRM
RNA methyltransferase, TrmH family, group 3 {ECO:0000313|EMBL:EFB76998.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_356_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6579..10247
DNA (3669bp) protein (1223aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJQ1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76999.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Cation transport ATPase
L1_007_000M1_scaffold_356_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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10312..10707
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJQ2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB77000.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
IS5 family transposase
L1_007_000M1_scaffold_356_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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10737..11603
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJQ3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB77001.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Protein of unknown function (DUF2899).
L1_007_000M1_scaffold_356_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11776..12657
DNA (882bp) protein (294aa)
Aldose 1-epimerase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJQ4_9FIRM
Aldose 1-epimerase {ECO:0000313|EMBL:EFB77002.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Galactose mutarotase and related enzymes
L1_007_000M1_scaffold_356_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12658..14511
DNA (1854bp) protein (618aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJQ5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB77003.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_356_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(14669..16090)
DNA (1422bp) protein (474aa)
Glycine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00006545}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00015978};; Glycyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00253}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
glycyl-tRNA synthetase (EC:6.1.1.14)
Glycine--tRNA ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLP5_9FIRM
L1_007_000M1_scaffold_356_13
unknown

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comp(16375..16596)
DNA (222bp) protein (74aa)

This feature has no annotations

L1_007_000M1_scaffold_356_14
unknown

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16725..17048
DNA (324bp) protein (108aa)

This feature has no annotations

L1_007_000M1_scaffold_356_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17117..18490
DNA (1374bp) protein (458aa)
UDP-N-acetylmuramate--L-alanine ligase {ECO:0000256|SAAS:SAAS00243344}; EC=6.3.2.8 {ECO:0000256|SAAS:SAAS00243344};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
UDP-N-acetylmuramate--L-alanine ligase (EC:6.3.2.8)
UDP-N-acetylmuramate--L-alanine ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLP2_9FIRM
L1_007_000M1_scaffold_356_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18766..20001
DNA (1236bp) protein (412aa)
Thermophilic metalloprotease (M29) n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLP1_9FIRM
Thermophilic metalloprotease (M29) {ECO:0000313|EMBL:EFB76339.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
peptidase M29 aminopeptidase II
L1_007_000M1_scaffold_356_17
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19989..21167
DNA (1179bp) protein (393aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1024 RepID=R5AQW5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX41541.1}; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
acyltransferase 3
L1_007_000M1_scaffold_356_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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21294..21791
DNA (498bp) protein (166aa)
Ribosome maturation factor RimP n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLN8_9FIRM
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_356_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22049..23122
DNA (1074bp) protein (358aa)
Transcription termination factor NusA n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLN7_9FIRM
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
transcription termination factor NusA
L1_007_000M1_scaffold_356_20
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23281..23589
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLN6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76334.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Predicted nucleic-acid-binding protein implicated in transcription termination
L1_007_000M1_scaffold_356_21
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23582..23884
DNA (303bp) protein (101aa)
Ribosomal protein L7Ae n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLN5_9FIRM
Ribosomal protein L7Ae {ECO:0000313|EMBL:EFB76333.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_356_22
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23904..26369
DNA (2466bp) protein (822aa)
Translation initiation factor IF-2 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLN4_9FIRM
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
bacterial translation initiation factor 2 (bIF-2)
L1_007_000M1_scaffold_356_23
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26387..26752
DNA (366bp) protein (122aa)
Ribosome-binding factor A n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLN3_9FIRM
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ribosome-binding factor A
L1_007_000M1_scaffold_356_24
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26783..27769
DNA (987bp) protein (329aa)
DHHA1 domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLN2_9FIRM
DHHA1 domain protein {ECO:0000313|EMBL:EFB76330.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Exopolyphosphatase-related proteins
L1_007_000M1_scaffold_356_25
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27867..28760
DNA (894bp) protein (298aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
tRNA pseudouridine 55 synthase (EC:5.4.99.12)
tRNA pseudouridine synthase B n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLN1_9FIRM
L1_007_000M1_scaffold_356_26
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28767..29702
DNA (936bp) protein (312aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
riboflavin kinase/FMN adenylyltransferase (EC:2.7.1.26 2.7.7.2)
Riboflavin biosynthesis protein RibF n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLN0_9FIRM
L1_007_000M1_scaffold_356_27
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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29870..30142
DNA (273bp) protein (91aa)
30S ribosomal protein S15 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLM9_9FIRM
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
SSU ribosomal protein S15P
L1_007_000M1_scaffold_356_28
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30432..32546
DNA (2115bp) protein (705aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
polyribonucleotide nucleotidyltransferase (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLM8_9FIRM
L1_007_000M1_scaffold_356_29
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32832..33098)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5Y726_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA20624.1}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
L1_007_000M1_scaffold_356_30
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33182..34390)
DNA (1209bp) protein (403aa)
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
acetate kinase (EC:2.7.2.1)
Acetate kinase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLM7_9FIRM
Displaying items 1-30 of 179 in total

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