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L1_007_000M1_scaffold_6259

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_6259_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(465..1148)
DNA (684bp) protein (228aa)
Sigma-70 region 2 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PK58_9FIRM
Sigma-70 region 2 {ECO:0000313|EMBL:EFB77156.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
RNA polymerase sigma factor, sigma-70 family
L1_007_000M1_scaffold_6259_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1180..1614)
DNA (435bp) protein (145aa)
Anti-sigma F factor {ECO:0000313|EMBL:EFB77155.1}; EC=2.7.11.1 {ECO:0000313|EMBL:EFB77155.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
anti-sigma F factor (EC:2.7.11.1)
Anti-sigma F factor n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PK57_9FIRM
L1_007_000M1_scaffold_6259_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1630..1926)
DNA (297bp) protein (99aa)
Anti-sigma factor antagonist n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PK56_9FIRM
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
anti-anti-sigma factor
L1_007_000M1_scaffold_6259_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2078..3376)
DNA (1299bp) protein (433aa)
bifunctional folylpolyglutamate synthase/dihydrofolate synthase (EC:6.3.2.17)
Bifunctional protein FolC n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PK55_9FIRM
Bifunctional protein FolC {ECO:0000313|EMBL:EFB77153.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_6259_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3373..4005)
DNA (633bp) protein (211aa)
VanZ-like protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PK54_9FIRM
VanZ-like protein {ECO:0000313|EMBL:EFB77152.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Predicted integral membrane protein
L1_007_000M1_scaffold_6259_6
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4174..4521
DNA (348bp) protein (116aa)
Arsenate reductase and related proteins, glutaredoxin family (EC:1.20.4.1)
ArsC family protein n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6PYG5_9FIRM
ArsC family protein {ECO:0000313|EMBL:CDC28605.1}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
L1_007_000M1_scaffold_6259_7
unknown

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4604..5233
DNA (630bp) protein (210aa)

This feature has no annotations

L1_007_000M1_scaffold_6259_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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5416..7488
DNA (2073bp) protein (691aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
valyl-tRNA synthetase (EC:6.1.1.9)
Valine--tRNA ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PK53_9FIRM
L1_007_000M1_scaffold_6259_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7822..8592)
DNA (771bp) protein (257aa)
Ricin-type beta-trefoil lectin domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PK51_9FIRM
Ricin-type beta-trefoil lectin domain protein {ECO:0000313|EMBL:EFB77149.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Ricin-type beta-trefoil lectin domain.
L1_007_000M1_scaffold_6259_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8843..10774)
DNA (1932bp) protein (644aa)
ABC transporter, ATP-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PK49_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFB77147.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
multidrug/protein/lipid ABC transporter ATPase
L1_007_000M1_scaffold_6259_11
unknown

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comp(10774..10845)
DNA (72bp) protein (24aa)

This feature has no annotations

Displaying 11 items

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