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L1_007_365G1_scaffold_53

Search features with annotation key words

Displaying items 61-90 of 154 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_365G1_scaffold_53_61
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(70984..71835)
DNA (852bp) protein (284aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Release factor glutamine methyltransferase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UQT6_9FIRM
protein-(glutamine-N5) methyltransferase, release factor-specific
L1_007_365G1_scaffold_53_62
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(71832..72809)
DNA (978bp) protein (326aa)
Predicted metal-dependent enzyme n=1 Tax=Roseburia sp. CAG:18 RepID=R5UIM3_9FIRM
Predicted metal-dependent enzyme {ECO:0000313|EMBL:CCZ78118.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Predicted metal-dependent enzyme
L1_007_365G1_scaffold_53_63
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(72846..73046)
DNA (201bp) protein (67aa)
50S ribosomal protein L31 n=6 Tax=Clostridiales RepID=C4Z908_EUBR3
ribosomal protein L31
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L1_007_365G1_scaffold_53_64
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(73242..74744)
DNA (1503bp) protein (501aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Transcription termination factor Rho n=1 Tax=Roseburia sp. CAG:18 RepID=R5V3X3_9FIRM
transcription termination factor Rho
L1_007_365G1_scaffold_53_65
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

74915..76120
DNA (1206bp) protein (402aa)
Malate dehydrogenase (Oxaloacetate-decarboxylating) n=1 Tax=Roseburia sp. CAG:18 RepID=R5UJC2_9FIRM
Malate dehydrogenase (Oxaloacetate-decarboxylating) {ECO:0000313|EMBL:CCZ78115.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
malate dehydrogenase (oxaloacetate-decarboxylating)
L1_007_365G1_scaffold_53_66
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

76110..77027
DNA (918bp) protein (306aa)
Putative radical SAM protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UQT3_9FIRM
Putative radical SAM protein {ECO:0000313|EMBL:CCZ78114.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
putative radical SAM protein
L1_007_365G1_scaffold_53_67
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

77020..77535
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UIL9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78113.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_365G1_scaffold_53_68
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(77544..78113)
DNA (570bp) protein (190aa)
Nitrilotriacetate monooxygenase component B n=1 Tax=Roseburia sp. CAG:18 RepID=R5VBK8_9FIRM
Nitrilotriacetate monooxygenase component B {ECO:0000313|EMBL:CCZ78112.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
nitrilotriacetate monooxygenase component B
L1_007_365G1_scaffold_53_69
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(78155..79627)
DNA (1473bp) protein (491aa)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; EC=6.3.2.13 {ECO:0000256|HAMAP-Rule:MF_00208};; Meso-A2pm-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; Meso-diaminopimelate-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
UDP-N-acetylmuramyl-tripeptide synthetases (EC:6.3.2.13)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase n=1 Tax=Roseburia sp. CAG:18 RepID=R5V3X0_9FIRM
L1_007_365G1_scaffold_53_70
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(79628..80464)
DNA (837bp) protein (279aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UJB9_9FIRM
L1_007_365G1_scaffold_53_71
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

80630..81472
DNA (843bp) protein (281aa)
Positive regulator for rhaBAD operon n=1 Tax=Roseburia sp. CAG:18 RepID=R5UQT0_9FIRM
Positive regulator for rhaBAD operon {ECO:0000313|EMBL:CCZ78109.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
positive regulator for rhaBAD operon
L1_007_365G1_scaffold_53_72
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(81485..83158)
DNA (1674bp) protein (558aa)
Inorganic pyrophosphatase/exopolyphosphatase (EC:3.6.1.1)
Inorganic pyrophosphatase/exopolyphosphatase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UIL7_9FIRM
Inorganic pyrophosphatase/exopolyphosphatase {ECO:0000313|EMBL:CCZ78108.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L1_007_365G1_scaffold_53_73
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(83260..84030)
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VBK3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78107.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_365G1_scaffold_53_74
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(84151..84414)
DNA (264bp) protein (88aa)
30S ribosomal protein S20 n=1 Tax=Roseburia sp. CAG:18 RepID=R5V3W7_9FIRM
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
rpsT; 30S ribosomal protein S20
L1_007_365G1_scaffold_53_75
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

84578..85561
DNA (984bp) protein (328aa)
DNA polymerase III, delta subunit (EC:2.7.7.7)
DNA polymerase III delta subunit n=1 Tax=Roseburia sp. CAG:18 RepID=R5UJB5_9FIRM
DNA polymerase III delta subunit {ECO:0000313|EMBL:CCZ78105.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L1_007_365G1_scaffold_53_76
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(85568..87970)
DNA (2403bp) protein (801aa)
Putative integral membrane protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UQS6_9FIRM
Putative integral membrane protein {ECO:0000313|EMBL:CCZ78104.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
DNA internalization-related competence protein ComEC/Rec2
L1_007_365G1_scaffold_53_77
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(87982..88923)
DNA (942bp) protein (314aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UIL5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78103.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_365G1_scaffold_53_78
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(88934..90385)
DNA (1452bp) protein (484aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Signal transduction histidine kinase n=1 Tax=Roseburia sp. CAG:18 RepID=R5VBK2_9FIRM
signal transduction histidine kinase
L1_007_365G1_scaffold_53_79
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(90410..91102)
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5V3W4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78101.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L1_007_365G1_scaffold_53_80
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(91111..91710)
DNA (600bp) protein (200aa)
ComEA protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UJB0_9FIRM
ComEA protein {ECO:0000313|EMBL:CCZ78100.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
competence protein ComEA helix-hairpin-helix repeat region
L1_007_365G1_scaffold_53_81
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(91792..92991)
DNA (1200bp) protein (400aa)
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
acetylornithine aminotransferase apoenzyme (EC:2.6.1.11)
Acetylornithine aminotransferase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UQS3_9FIRM
L1_007_365G1_scaffold_53_82
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(93015..93908)
DNA (894bp) protein (298aa)
Acetylglutamate kinase {ECO:0000256|HAMAP-Rule:MF_00082, ECO:0000256|SAAS:SAAS00245375}; EC=2.7.2.8 {ECO:0000256|HAMAP-Rule:MF_00082, ECO:0000256|SAAS:SAAS00245383};; N-acetyl-L-glutamate 5-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00082}; NAG kinase {ECO:0000256|HAMAP-Rule:MF_00082}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
acetylglutamate kinase (EC:2.7.2.8)
Acetylglutamate kinase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UIL1_9FIRM
L1_007_365G1_scaffold_53_83
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(93919..94377)
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VBJ9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78097.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_365G1_scaffold_53_84
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(94467..95525)
DNA (1059bp) protein (353aa)
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393}; Short=AGPR {ECO:0000256|HAMAP-Rule:MF_00150};; EC=1.2.1.38 {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393};; N-acetyl-glutamate semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00150}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
N-acetyl-gamma-glutamyl-phosphate reductase n=1 Tax=Roseburia sp. CAG:18 RepID=R5V3W2_9FIRM
argC; N-acetyl-gamma-glutamyl-phosphate reductase
L1_007_365G1_scaffold_53_85
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

95737..96966
DNA (1230bp) protein (410aa)
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00013047}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00009947};; Citrulline--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00005}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Argininosuccinate synthase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UJA9_9FIRM
argininosuccinate synthase
L1_007_365G1_scaffold_53_86
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(97034..98110)
DNA (1077bp) protein (359aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UVE7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79704.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L1_007_365G1_scaffold_53_87
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(98237..98968)
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UN49_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79703.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_365G1_scaffold_53_88
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(98989..99858)
DNA (870bp) protein (290aa)
Probable endonuclease 4 {ECO:0000256|HAMAP-Rule:MF_00152}; EC=3.1.21.2 {ECO:0000256|HAMAP-Rule:MF_00152};; Endodeoxyribonuclease IV {ECO:0000256|HAMAP-Rule:MF_00152}; Endonuclease IV {ECO:0000256|HAMAP-Rule:MF_00152}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
Probable endonuclease 4 n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FVI2_9FIRM
apurinic endonuclease Apn1
L1_007_365G1_scaffold_53_89
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(99860..100648)
DNA (789bp) protein (263aa)
Ketoacyl reductase putative n=1 Tax=Roseburia sp. CAG:197 RepID=R5YRQ6_9FIRM
Ketoacyl reductase putative {ECO:0000313|EMBL:CDA24136.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
Short-chain dehydrogenases of various substrate specificities
L1_007_365G1_scaffold_53_90
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(100779..105281)
DNA (4503bp) protein (1501aa)
Glycosidases n=1 Tax=Roseburia sp. CAG:18 RepID=R5ULA7_9FIRM
Glycosidases {ECO:0000313|EMBL:CCZ79073.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Glycosidases
Displaying items 61-90 of 154 in total

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