ggKbase home page

L1_007_365G1_scaffold_53

Search features with annotation key words

Displaying items 121-150 of 154 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_365G1_scaffold_53_121
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(133671..134006)
DNA (336bp) protein (112aa)
Flagellar biosynthesis n=1 Tax=Roseburia sp. CAG:18 RepID=R5UL92_9FIRM
Flagellar biosynthesis {ECO:0000313|EMBL:CCZ79043.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB
L1_007_365G1_scaffold_53_122
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(134008..135801)
DNA (1794bp) protein (598aa)
Flagellar hook-length control protein FliK n=1 Tax=Roseburia sp. CAG:18 RepID=R5VEA1_9FIRM
Flagellar hook-length control protein FliK {ECO:0000313|EMBL:CCZ79042.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Flagellar hook-length control protein FliK.
L1_007_365G1_scaffold_53_123
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(135837..136598)
DNA (762bp) protein (254aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Ribonuclease HII n=1 Tax=Roseburia sp. CAG:18 RepID=R5V6I3_9FIRM
rnhB; ribonuclease HII
L1_007_365G1_scaffold_53_124
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(136591..137448)
DNA (858bp) protein (286aa)
Ribosome biogenesis GTPase A n=1 Tax=Roseburia sp. CAG:18 RepID=R5ULZ5_9FIRM
Ribosome biogenesis GTPase A {ECO:0000256|PIRNR:PIRNR006230}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
ribosome biogenesis GTP-binding protein YlqF
L1_007_365G1_scaffold_53_125
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(137480..138061)
DNA (582bp) protein (194aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
signal peptidase I, bacterial type (EC:3.4.21.89)
Signal peptidase I n=1 Tax=Roseburia sp. CAG:18 RepID=R5UTN5_9FIRM
L1_007_365G1_scaffold_53_126
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(138133..138486)
DNA (354bp) protein (118aa)
50S ribosomal protein L19 n=1 Tax=Roseburia sp. CAG:18 RepID=R5UL90_9FIRM
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
ribosomal protein L19, bacterial type
L1_007_365G1_scaffold_53_127
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(138657..140087)
DNA (1431bp) protein (477aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|SAAS:SAAS00014918}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|SAAS:SAAS00014917};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Roseburia sp. CAG:18 RepID=R5VE95_9FIRM
tRNA (guanine-N1)-methyltransferase
L1_007_365G1_scaffold_53_128
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(140102..140608)
DNA (507bp) protein (169aa)
Ribosome maturation factor RimM n=1 Tax=Roseburia sp. CAG:18 RepID=R5V6H9_9FIRM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
rimM; 16S rRNA-processing protein RimM
L1_007_365G1_scaffold_53_129
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(140709..140939)
DNA (231bp) protein (77aa)
UPF0109 protein BN518_00341 n=1 Tax=Roseburia sp. CAG:18 RepID=R5ULY8_9FIRM
UPF0109 protein BN518_00341 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_365G1_scaffold_53_130
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(140962..141207)
DNA (246bp) protein (82aa)
30S ribosomal protein S16 n=1 Tax=Roseburia sp. CAG:18 RepID=R5UTN2_9FIRM
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
SSU ribosomal protein S16P
L1_007_365G1_scaffold_53_131
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(141240..142598)
DNA (1359bp) protein (453aa)
Signal recognition particle protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UL87_9FIRM
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
signal recognition particle protein
L1_007_365G1_scaffold_53_132
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(142600..142989)
DNA (390bp) protein (130aa)
UPF0122 protein EUR_09570 n=1 Tax=Roseburia sp. CAG:18 RepID=R5VE90_9FIRM
UPF0122 protein BN518_00338 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_365G1_scaffold_53_133
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(143021..144238)
DNA (1218bp) protein (406aa)
Threonine dehydratase medium form n=1 Tax=Roseburia sp. CAG:18 RepID=R5V6H7_9FIRM
Threonine dehydratase medium form {ECO:0000313|EMBL:CCZ79031.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
threonine dehydratase
L1_007_365G1_scaffold_53_134
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(144216..145178)
DNA (963bp) protein (321aa)
Signal recognition particle receptor FtsY n=1 Tax=Roseburia sp. CAG:18 RepID=R5ULY5_9FIRM
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
cell division protein FtsY
L1_007_365G1_scaffold_53_135
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(145222..148779)
DNA (3558bp) protein (1186aa)
Chromosome partition protein Smc n=1 Tax=Roseburia sp. CAG:18 RepID=R5UTM9_9FIRM
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
chromosome segregation protein SMC
L1_007_365G1_scaffold_53_136
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(148783..149472)
DNA (690bp) protein (230aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
RNAse III (EC:3.1.26.3)
Ribonuclease 3 n=1 Tax=Roseburia sp. CAG:18 RepID=R5UL85_9FIRM
L1_007_365G1_scaffold_53_137
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(149530..149766)
DNA (237bp) protein (79aa)
Acyl carrier protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VE85_9FIRM
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
acyl carrier protein
L1_007_365G1_scaffold_53_138
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(149785..150810)
DNA (1026bp) protein (342aa)
Phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054336}; EC=2.3.1.n2 {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054327};; Acyl-ACP phosphotransacylase {ECO:0000256|HAMAP-Rule:MF_00019}; Acyl-[acyl-carrier-protein]--phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; Phosphate-acyl-ACP acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Phosphate acyltransferase n=1 Tax=Roseburia sp. CAG:18 RepID=R5V6H3_9FIRM
phosphate:acyl-[acyl carrier protein] acyltransferase
L1_007_365G1_scaffold_53_139
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(150951..151130)
DNA (180bp) protein (60aa)
50S ribosomal protein L32 n=1 Tax=Roseburia sp. CAG:18 RepID=R5ULY1_9FIRM
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_365G1_scaffold_53_140
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(151135..151659)
DNA (525bp) protein (175aa)
Predicted Zn-finger-like protein possible nucleic acid binding n=1 Tax=Roseburia sp. CAG:18 RepID=R5UTM6_9FIRM
Predicted Zn-finger-like protein possible nucleic acid binding {ECO:0000313|EMBL:CCZ79024.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
nucleic acid-binding Zn-finger-like protein
L1_007_365G1_scaffold_53_141
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(151751..152941)
DNA (1191bp) protein (397aa)
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Acetate kinase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UL81_9FIRM
acetate kinase
L1_007_365G1_scaffold_53_142
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

153102..154412
DNA (1311bp) protein (437aa)
UPF0348 protein EUBREC_1493 n=1 Tax=Roseburia sp. CAG:18 RepID=R5VE80_9FIRM
UPF0348 protein BN518_00328 {ECO:0000256|HAMAP-Rule:MF_01539}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
cytidyltransferase-related domain
L1_007_365G1_scaffold_53_143
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(154416..155528)
DNA (1113bp) protein (371aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
3-dehydroquinate synthase n=1 Tax=Roseburia sp. CAG:18 RepID=R5V6G9_9FIRM
3-dehydroquinate synthase
L1_007_365G1_scaffold_53_144
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(155547..156134)
DNA (588bp) protein (196aa)
Predicted double-stranded RNA/RNA-DNA hybrid binding protein (EC:3.1.26.4)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5ULX8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79020.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L1_007_365G1_scaffold_53_145
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(156138..157010)
DNA (873bp) protein (291aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Roseburia sp. CAG:18 RepID=R5UTM2_9FIRM
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CCZ79019.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_365G1_scaffold_53_146
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(157035..158714)
DNA (1680bp) protein (560aa)
Glutamine--tRNA ligase {ECO:0000256|SAAS:SAAS00023088}; EC=6.1.1.18 {ECO:0000256|SAAS:SAAS00023088};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Glutaminyl-tRNA synthetase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UL79_9FIRM
glutaminyl-tRNA synthetase
L1_007_365G1_scaffold_53_147
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(158799..160010)
DNA (1212bp) protein (404aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VE75_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79017.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
nucleoside-binding protein
L1_007_365G1_scaffold_53_148
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(160039..160914)
DNA (876bp) protein (292aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5V6G6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79016.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_365G1_scaffold_53_149
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

161167..165420
DNA (4254bp) protein (1418aa)
Putative R-2-hydroxyglutaryl-CoA dehydratase subunit/R-2-hydroxyglutaryl-CoA dehydratase activase n=1 Tax=Roseburia sp. CAG:18 RepID=R5ULX4_9FIRM
Putative R-2-hydroxyglutaryl-CoA dehydratase subunit/R-2-hydroxyglutaryl-CoA dehydratase activase {ECO:0000313|EMBL:CCZ79015.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
putative R-2-hydroxyglutaryl-CoA dehydratase subunit/R-2-hydroxyglutaryl-CoA dehydratase activase
L1_007_365G1_scaffold_53_150
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(165506..166879)
DNA (1374bp) protein (458aa)
Polyphosphate:AMP phosphotransferase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UTL9_9FIRM
Polyphosphate:AMP phosphotransferase {ECO:0000313|EMBL:CCZ79014.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
polyphosphate:AMP phosphotransferase
Displaying items 121-150 of 154 in total

View Taxonomy