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L1_007_365G1_scaffold_53

Search features with annotation key words

Displaying items 1-30 of 154 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_365G1_scaffold_53_1
unknown

Not on your lists

comp(43..1077)
DNA (1035bp) protein (345aa)

This feature has no annotations

L1_007_365G1_scaffold_53_2
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1117..1257)
DNA (141bp) protein (47aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FR32_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG94894.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
L1_007_365G1_scaffold_53_3
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1250..1840)
DNA (591bp) protein (197aa)
Accessory protein regulator protein B n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FR33_9FIRM
Accessory protein regulator protein B {ECO:0000313|EMBL:EEG94896.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
Accessory gene regulator B.
L1_007_365G1_scaffold_53_4
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1972..3282)
DNA (1311bp) protein (437aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FR35_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG94897.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
sensor kinase protein
L1_007_365G1_scaffold_53_5
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3282..4007)
DNA (726bp) protein (242aa)
LytTr DNA-binding domain protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FR36_9FIRM
LytTr DNA-binding domain protein {ECO:0000313|EMBL:EEG94898.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
transcriptional regulator, LytR/AlgR family
L1_007_365G1_scaffold_53_6
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4436..5701
DNA (1266bp) protein (422aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=N2A1M9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOS81169.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
transposase IS111A/IS1328/IS1533
L1_007_365G1_scaffold_53_7
unknown

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comp(5785..6534)
DNA (750bp) protein (250aa)

This feature has no annotations

L1_007_365G1_scaffold_53_8
[Clostridium] sticklandii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6715..7635
DNA (921bp) protein (307aa)
hrdc domain-containing protein n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2BD69
putative HRDC domain protein
Putative HRDC domain protein {ECO:0000313|EMBL:CBH22404.1}; TaxID=499177 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB; 10654).;"
L1_007_365G1_scaffold_53_9
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7788..8804)
DNA (1017bp) protein (339aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5ULR4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79248.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases
L1_007_365G1_scaffold_53_10
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8844..10049)
DNA (1206bp) protein (402aa)
Nicotinate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00570, ECO:0000256|RuleBase:RU003838}; Short=NAPRTase {ECO:0000256|HAMAP-Rule:MF_00570};; EC=6.3.4.21 {ECO:0000256|HAMAP-Rule:MF_00570, ECO:0000256|RuleBase:RU003838};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
nicotinate phosphoribosyltransferase (EC:2.4.2.11)
Nicotinate phosphoribosyltransferase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UU62_9FIRM
L1_007_365G1_scaffold_53_11
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10087..10623)
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UME8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79250.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Amidases related to nicotinamidase
L1_007_365G1_scaffold_53_12
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10648..12378)
DNA (1731bp) protein (577aa)
Uncharacterized protein n=2 Tax=root RepID=R5V712_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79251.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Predicted ATPase of the ABC class
L1_007_365G1_scaffold_53_13
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12397..16809)
DNA (4413bp) protein (1471aa)
von Willebrand factor n=1 Tax=Roseburia sp. CAG:18 RepID=R5VET4_9FIRM
von Willebrand factor {ECO:0000313|EMBL:CCZ79252.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_365G1_scaffold_53_14
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16830..17708)
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5ULS0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79253.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_365G1_scaffold_53_15
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17701..18657)
DNA (957bp) protein (319aa)
ATPase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UU68_9FIRM
ATPase {ECO:0000313|EMBL:CCZ79254.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_365G1_scaffold_53_16
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18673..19962)
DNA (1290bp) protein (430aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UMF3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79255.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_365G1_scaffold_53_17
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19955..20848)
DNA (894bp) protein (298aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5V716_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79256.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_365G1_scaffold_53_18
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20838..21770)
DNA (933bp) protein (311aa)
ABC-type multidrug transport system ATPase component n=1 Tax=Roseburia sp. CAG:18 RepID=R5VEU0_9FIRM
ABC-type multidrug transport system ATPase component {ECO:0000313|EMBL:CCZ79257.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
ABC-type multidrug transport system, ATPase component
L1_007_365G1_scaffold_53_19
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21757..23781)
DNA (2025bp) protein (675aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5ULS5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79258.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_365G1_scaffold_53_20
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23958..24479)
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UU73_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79259.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_365G1_scaffold_53_21
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24704..25483)
DNA (780bp) protein (260aa)
RNA polymerase sigma factor n=1 Tax=Roseburia sp. CAG:18 RepID=R5UMF7_9FIRM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
RNA polymerase, sigma subunit, RpsG/SigG
L1_007_365G1_scaffold_53_22
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25607..27220)
DNA (1614bp) protein (538aa)
Predicted exonuclease of the beta-lactamase fold involved in RNA processing n=1 Tax=Roseburia sp. CAG:18 RepID=R5V721_9FIRM
Predicted exonuclease of the beta-lactamase fold involved in RNA processing {ECO:0000313|EMBL:CCZ79261.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
putative exonuclease of the beta-lactamase fold involved in RNA processing
L1_007_365G1_scaffold_53_23
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27304..28038)
DNA (735bp) protein (245aa)
RNA polymerase sigma factor n=1 Tax=Roseburia sp. CAG:18 RepID=R5VEU5_9FIRM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
sporulation sigma factor SigE
L1_007_365G1_scaffold_53_24
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28022..28765)
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5ULT0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79263.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L1_007_365G1_scaffold_53_25
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28985..30265)
DNA (1281bp) protein (427aa)
Cell division protein FtsZ n=1 Tax=Roseburia sp. CAG:18 RepID=R5UU79_9FIRM
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU000631}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
cell division protein ftsZ
L1_007_365G1_scaffold_53_26
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30377..31150)
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UMG1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79265.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_365G1_scaffold_53_27
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31158..32285)
DNA (1128bp) protein (376aa)
Bacterial cell division membrane protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5V726_9FIRM
Bacterial cell division membrane protein {ECO:0000313|EMBL:CCZ79266.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
cell division membrane protein
L1_007_365G1_scaffold_53_28
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32292..33653)
DNA (1362bp) protein (454aa)
UDP-N-acetylmuramoylalanine--D-glutamate ligase {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084542}; EC=6.3.2.9 {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084342};; D-glutamic acid-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00639}; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase {ECO:0000256|HAMAP-Rule:MF_00639}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC:6.3.2.9)
UDP-N-acetylmuramoylalanine--D-glutamate ligase n=1 Tax=Roseburia sp. CAG:18 RepID=R5VEV1_9FIRM
L1_007_365G1_scaffold_53_29
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33699..35420)
DNA (1722bp) protein (574aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5ULT5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79268.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
peptidoglycan glycosyltransferase
L1_007_365G1_scaffold_53_30
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35487..37445)
DNA (1959bp) protein (653aa)
Peptidoglycan glycosyltransferase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UU84_9FIRM
Peptidoglycan glycosyltransferase {ECO:0000313|EMBL:CCZ79269.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
peptidoglycan glycosyltransferase
Displaying items 1-30 of 154 in total

View Taxonomy