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L1_007_365G1_scaffold_258

Search features with annotation key words

Displaying items 1-30 of 77 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_365G1_scaffold_258_1
unknown

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2..559
DNA (558bp) protein (186aa)

This feature has no annotations

L1_007_365G1_scaffold_258_2
Firmicutes bacterium CAG:270, Firmicutes, Bacteria

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621..1424
DNA (804bp) protein (268aa)
Antirepressor n=1 Tax=Firmicutes bacterium CAG:270 RepID=R7C3R8_9FIRM
Antirepressor {ECO:0000313|EMBL:CDD72726.1}; TaxID=1263014 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:270.;"
prophage antirepressor
L1_007_365G1_scaffold_258_3
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1493..1852)
DNA (360bp) protein (120aa)
NMT1/THI5-like protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0BYM3_9CLOT
NMT1/THI5-like protein {ECO:0000313|EMBL:EEG74951.1}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components
L1_007_365G1_scaffold_258_4
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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2089..2289
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BAH9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG83574.1}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
cold shock protein
L1_007_365G1_scaffold_258_5
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2579..3259
DNA (681bp) protein (227aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. D5 RepID=F0YXV0_9CLOT
Putative uncharacterized protein {ECO:0000313|EMBL:EGB93052.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
hypothetical protein
L1_007_365G1_scaffold_258_6
Terrisporobacter othiniensis, Terrisporobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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3313..4242
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) RepID=A2SQ63_METLZ
Uncharacterized protein {ECO:0000313|EMBL:KHS56760.1}; TaxID=1577792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Terrisporobacter.;" source="Terrisporobacter othiniensis.;"
hypothetical protein
L1_007_365G1_scaffold_258_7
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4309..4509)
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3B8F1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG79545.1}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
hypothetical protein
L1_007_365G1_scaffold_258_8
Coprococcus comes, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4625..5362
DNA (738bp) protein (246aa)
PHP domain protein {ECO:0000313|EMBL:EEG90851.1}; EC=3.1.3.- {ECO:0000313|EMBL:EEG90851.1};; TaxID=470146 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus comes ATCC 27758.;"
PHP domain protein n=2 Tax=Coprococcus RepID=C0B7F8_9FIRM
Histidinol phosphatase and related hydrolases of the PHP family
L1_007_365G1_scaffold_258_9
Lachnospiraceae bacterium CAG:215, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5447..5740
DNA (294bp) protein (98aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=R6EJQ9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA96931.1}; TaxID=1262985 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:215.;"
TrpR-related protein YerC/YecD
L1_007_365G1_scaffold_258_10
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5803..6405)
DNA (603bp) protein (201aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0NHA0_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EDS05977.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
Domain of unknown function (DUF1836).
L1_007_365G1_scaffold_258_11
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6577..8829
DNA (2253bp) protein (751aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ATP-dependent DNA helicase PcrA n=2 Tax=Clostridium RepID=B6FIS4_9CLOT
ATP-dependent DNA helicase PcrA
L1_007_365G1_scaffold_258_12
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8938..9186
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BA94_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG83807.1}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
hypothetical protein
L1_007_365G1_scaffold_258_13
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9268..10653
DNA (1386bp) protein (462aa)
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:EDS05966.1}; EC=2.1.1.- {ECO:0000313|EMBL:EDS05966.1};; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NH89_CLOSV
tRNA (uracil-5-) -methyltransferase
L1_007_365G1_scaffold_258_14
Firmicutes bacterium CAG:95, Firmicutes, Bacteria

Not on your lists

10717..11694
DNA (978bp) protein (326aa)
birA; Bifunctional protein birA (EC:6.3.4.15)
Biotin--[acetyl-CoA-carboxylase] ligase n=1 Tax=Firmicutes bacterium CAG:95 RepID=R7N469_9FIRM
Bifunctional ligase/repressor BirA {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--protein ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin-[acetyl-CoA carboxylase] synthetase {ECO:0000256|HAMAP-Rule:MF_00978}; TaxID=1262988 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:95.;"
L1_007_365G1_scaffold_258_15
Blautia sp. CAG:237, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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11884..12912
DNA (1029bp) protein (343aa)
DnaJ-class molecular chaperone with C-terminal Zn finger domain n=1 Tax=Blautia sp. CAG:237 RepID=R6KTG9_9FIRM
DnaJ-class molecular chaperone with C-terminal Zn finger domain {ECO:0000313|EMBL:CDB78513.1}; TaxID=1262755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:237.;"
DnaJ-class molecular chaperone with C-terminal Zn finger domain
L1_007_365G1_scaffold_258_16
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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13019..14614
DNA (1596bp) protein (532aa)
hypothetical protein n=1 Tax=Megamonas rupellensis RepID=UPI00037BFAC4
Uncharacterized protein {ECO:0000313|EMBL:EGJ46971.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
amidohydrolase
L1_007_365G1_scaffold_258_17
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

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14756..15907
DNA (1152bp) protein (384aa)
23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RGU9_9FIRM
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:CDC42241.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
23S rRNA (uracil-5-)-methyltransferase RumA
L1_007_365G1_scaffold_258_18
Azospirillum sp. CAG:239, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16061..16534)
DNA (474bp) protein (158aa)
6-O-methylguanine DNA methyltransferase DNA binding domain protein n=1 Tax=Azospirillum sp. CAG:239 RepID=R6JS40_9PROT
6-O-methylguanine DNA methyltransferase DNA binding domain protein {ECO:0000313|EMBL:CDB52922.1}; TaxID=1262705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum; environmental samples.;" source="Azospirillum sp. CAG:239.;"
6-O-methylguanine DNA methyltransferase
L1_007_365G1_scaffold_258_19
Selenomonas ruminantium, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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16811..17440
DNA (630bp) protein (210aa)
Putative TetR family transcriptional regulator n=1 Tax=Selenomonas ruminantium subsp. lactilytica (strain NBRC 103574 / TAM6421) RepID=I0GVR6_SELRL
putative TetR family transcriptional regulator
Putative TetR family transcriptional regulator {ECO:0000313|EMBL:BAL84853.1}; TaxID=927704 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas.;" source="Selenomonas ruminantium subsp. lactilytica (strain NBRC 103574 /; TAM6421).;"
L1_007_365G1_scaffold_258_20
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17433..17660
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VT31_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDO61327.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
L1_007_365G1_scaffold_258_21
Gordonibacter pamelaeae, Gordonibacter, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

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17657..18136
DNA (480bp) protein (160aa)
Flavodoxin-like fold n=1 Tax=Coprococcus catus GD/7 RepID=D4JBE1_9FIRM
Flavodoxin-like fold.
Flavodoxins {ECO:0000313|EMBL:CBL04856.1}; TaxID=657308 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Gordonibacter.;" source="Gordonibacter pamelaeae 7-10-1-b.;"
L1_007_365G1_scaffold_258_22
Blautia sp. CAG:37, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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18409..20358
DNA (1950bp) protein (650aa)
Fructose-1,6-bisphosphatase class 3 {ECO:0000256|HAMAP-Rule:MF_01854}; Short=FBPase class 3 {ECO:0000256|HAMAP-Rule:MF_01854};; EC=3.1.3.11 {ECO:0000256|HAMAP-Rule:MF_01854};; D-fructose-1,6-bisphosphate 1-phosphohydrolase class 3 {ECO:0000256|HAMAP-Rule:MF_01854}; TaxID=1262757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:37.;"
hypothetical protein (EC:3.1.3.11)
Fructose-1,6-bisphosphatase class 3 n=1 Tax=Blautia sp. CAG:37 RepID=R7JQD5_9FIRM
L1_007_365G1_scaffold_258_23
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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20370..21362
DNA (993bp) protein (331aa)
Oxidoreductase aldo/keto reductase family n=1 Tax=Dorea sp. CAG:317 RepID=R6WKE8_9FIRM
Oxidoreductase aldo/keto reductase family {ECO:0000313|EMBL:CDD07379.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
aldo/keto reductase
L1_007_365G1_scaffold_258_24
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21412..22299)
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Dorea sp. 5-2 RepID=R9N8H9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS79403.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
AraC family transcriptional regulator
L1_007_365G1_scaffold_258_25
Dorea sp. CAG:105, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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22554..23717
DNA (1164bp) protein (388aa)
Galactokinase {ECO:0000256|HAMAP-Rule:MF_00246, ECO:0000256|SAAS:SAAS00025843}; EC=2.7.1.6 {ECO:0000256|HAMAP-Rule:MF_00246, ECO:0000256|SAAS:SAAS00015833};; Galactose kinase {ECO:0000256|HAMAP-Rule:MF_00246}; TaxID=1262872 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:105.;"
galactokinase (EC:2.7.1.6)
Galactokinase n=1 Tax=Dorea sp. CAG:105 RepID=R5CYW7_9FIRM
L1_007_365G1_scaffold_258_26
Firmicutes bacterium CAG:227, Firmicutes, Bacteria

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23735..25225
DNA (1491bp) protein (497aa)
Galactose-1-phosphate uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571}; Short=Gal-1-P uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571};; EC=2.7.7.12 {ECO:0000256|HAMAP-Rule:MF_00571};; UDP-glucose--hexose-1-phosphate uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571}; TaxID=1263010 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:227.;"
UTP-hexose-1-phosphate uridylyltransferase (EC:2.7.7.10)
Galactose-1-phosphate uridylyltransferase n=1 Tax=Firmicutes bacterium CAG:227 RepID=R6V4Y2_9FIRM
L1_007_365G1_scaffold_258_27
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25297..27039)
DNA (1743bp) protein (581aa)
Uncharacterized protein n=2 Tax=unclassified Lachnospiraceae RepID=E9RSV4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG87575.1}; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
Predicted RNA-binding protein homologous to eukaryotic snRNP
L1_007_365G1_scaffold_258_28
Lachnospiraceae bacterium 6_1_37FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27203..28081
DNA (879bp) protein (293aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=E9RSV5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGC75708.1}; TaxID=658656 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_37FAA.;"
conserved hypothetical protein TIGR00255
L1_007_365G1_scaffold_258_29
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

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28103..28720
DNA (618bp) protein (206aa)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
guanylate kinase (EC:2.7.4.8)
Guanylate kinase n=2 Tax=Clostridium RepID=B6FMS2_9CLOT
L1_007_365G1_scaffold_258_30
Coprococcus comes CAG:19, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28746..28988
DNA (243bp) protein (81aa)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=1263070 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus comes CAG:19.;"
DNA-directed RNA polymerase, omega subunit (EC:2.7.7.6)
DNA-directed RNA polymerase subunit omega n=2 Tax=Coprococcus RepID=R6LKJ5_9FIRM
Displaying items 1-30 of 77 in total

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