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L1_008_000G1_scaffold_17

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Displaying items 1-30 of 251 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000G1_scaffold_17_1
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(158..1315)
DNA (1158bp) protein (386aa)
opuCA; glycine betaine/carnitine/choline ABC transporter, ATP-binding protein (EC:3.6.3.32)
OpuCA protein {ECO:0000313|EMBL:AFJ54835.1}; EC=3.6.3.32 {ECO:0000313|EMBL:AFJ54835.1};; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506.;"
Glycine betaine/carnitine/choline ABC transporter, ATP-binding protein n=3 Tax=Pseudomonas RepID=I2BKQ2_PSEFL
L1_008_000G1_scaffold_17_2
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1312..1965)
DNA (654bp) protein (218aa)
opuCB; glycine betaine/carnitine/choline ABC transporter, permease protein (EC:3.6.3.32)
Glycine betaine/carnitine/choline ABC transporter, permease protein {ECO:0000313|EMBL:EIK62921.1}; EC=3.6.3.32 {ECO:0000313|EMBL:EIK62921.1};; TaxID=1038924 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens SS101.;"
Glycine betaine/carnitine/choline ABC transporter, permease protein n=4 Tax=Pseudomonas RepID=I2BMT4_PSEFL
L1_008_000G1_scaffold_17_3
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1978..2871)
DNA (894bp) protein (298aa)
opuCC; glycine betaine/carnitine/choline ABC transporter, periplasmic glycine betaine/carnitine/choline-binding protein (EC:3.6.3.32)
OpuCC protein {ECO:0000313|EMBL:AFJ57476.1}; EC=3.6.3.32 {ECO:0000313|EMBL:AFJ57476.1};; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506.;"
Glycine betaine/carnitine/choline ABC transporter, periplasmic glycine betaine/carnitine/choline-binding protein n=1 Tax=Pseudomonas fluorescens A506 RepID=I2BT93_PSEFL
L1_008_000G1_scaffold_17_4
Pseudomonas sp. TKP, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2891..3607)
DNA (717bp) protein (239aa)
Putative amino acid ABC transporter membrane protein n=1 Tax=Pseudomonas sp. CF150 RepID=S6J8G0_9PSED
L-proline glycine betaine ABC transport system permease protein ProW
Glycine/betaine ABC transporter permease {ECO:0000313|EMBL:AHC33602.1}; TaxID=1415630 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. TKP.;"
L1_008_000G1_scaffold_17_5
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3940..5523
DNA (1584bp) protein (528aa)
Peptide chain release factor 3 n=3 Tax=Pseudomonas RepID=I2BWH7_PSEFL
Peptide chain release factor 3 {ECO:0000256|HAMAP-Rule:MF_00072, ECO:0000256|SAAS:SAAS00089051}; Short=RF-3 {ECO:0000256|HAMAP-Rule:MF_00072};; TaxID=1038924 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens SS101.;"
prfC; peptide chain release factor 3
L1_008_000G1_scaffold_17_6
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5750..6010
DNA (261bp) protein (87aa)
Uncharacterized protein n=2 Tax=Pseudomonas RepID=I2BY36_PSEFL
hypothetical protein
Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
L1_008_000G1_scaffold_17_7
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6084..8342)
DNA (2259bp) protein (753aa)
Outer membrane receptor FepA n=1 Tax=Pseudomonas sp. CF150 RepID=S6KVD6_9PSED
pfeA; TonB-dependent outermembrane ferric enterobactin receptor
Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
L1_008_000G1_scaffold_17_8
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8735..9706)
DNA (972bp) protein (324aa)
Dipeptide ABC transporter, ATP-binding protein DppF n=2 Tax=Pseudomonas RepID=I2BT45_PSEFL
dppF; dipeptide ABC transporter ATP-binding protein DppF
Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
L1_008_000G1_scaffold_17_9
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9706..10674)
DNA (969bp) protein (323aa)
Dipeptide ABC transporter, ATP-binding protein DppD n=3 Tax=Pseudomonas RepID=I2BSE3_PSEFL
dppD; dipeptide ABC transporter ATP-binding protein DppD
DppD protein {ECO:0000313|EMBL:AFJ57176.1}; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506.;"
L1_008_000G1_scaffold_17_10
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10685..11596)
DNA (912bp) protein (304aa)
Dipeptide ABC transporter, permease protein DppC n=4 Tax=Pseudomonas RepID=I2BNY2_PSEFL
Dipeptide transport system permease protein DppC
DppC protein {ECO:0000313|EMBL:AFJ55965.1}; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506.;"
L1_008_000G1_scaffold_17_11
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11607..12659)
DNA (1053bp) protein (351aa)
peptide ABC transporter permease n=1 Tax=Pseudomonas fluorescens RepID=UPI000370384D
Dipeptide transport system permease protein DppB
Dipeptide transport system permease protein DppB {ECO:0000313|EMBL:AKA84451.1}; TaxID=294 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens.;"
L1_008_000G1_scaffold_17_12
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12694..14292)
DNA (1599bp) protein (533aa)
Dipeptide ABC transporter, periplasmic dipeptide-binding protein DppA 1 n=3 Tax=Pseudomonas RepID=I2BMP3_PSEFL
DppA1 protein {ECO:0000313|EMBL:AFJ55526.1}; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506.;"
dppA1; dipeptide ABC transporter, periplasmic dipeptide-binding protein DppA 1
L1_008_000G1_scaffold_17_13
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14373..15767)
DNA (1395bp) protein (465aa)
Outer membrane porin, OprD family n=2 Tax=Pseudomonas RepID=I4KF94_PSEFL
outer membrane porin, OprD family
Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
L1_008_000G1_scaffold_17_14
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15939..17543)
DNA (1605bp) protein (535aa)
Dipeptide ABC transporter substrate-binding protein n=1 Tax=Pseudomonas sp. CF150 RepID=S6J8E7_9PSED
dppA2; dipeptide ABC transporter, periplasmic dipeptide-binding protein DppA 2
Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
L1_008_000G1_scaffold_17_15
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17849..19477)
DNA (1629bp) protein (543aa)
Dipeptide ABC transporter, periplasmic dipeptide-binding protein DppA 3 n=3 Tax=Pseudomonas RepID=I2BVN5_PSEFL
DppA3 protein {ECO:0000313|EMBL:AFJ58318.1}; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506.;"
dppA3; dipeptide ABC transporter, periplasmic dipeptide-binding protein DppA 3
L1_008_000G1_scaffold_17_16
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19736..21337)
DNA (1602bp) protein (534aa)
Dipeptide ABC transporter, periplasmic dipeptide-binding protein DppA 4 n=2 Tax=Pseudomonas RepID=I2BVD6_PSEFL
DppA4 protein {ECO:0000313|EMBL:AFJ58219.1}; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506.;"
dppA4; dipeptide ABC transporter, periplasmic dipeptide-binding protein DppA 4
L1_008_000G1_scaffold_17_17
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21441..24788)
DNA (3348bp) protein (1116aa)
Uncharacterized protein n=1 Tax=Pseudomonas fluorescens A506 RepID=I2BP05_PSEFL
hypothetical protein
Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
L1_008_000G1_scaffold_17_18
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24969..25682)
DNA (714bp) protein (238aa)
Uncharacterized protein n=3 Tax=Pseudomonas RepID=I2BQ56_PSEFL
hypothetical protein
Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
L1_008_000G1_scaffold_17_19
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25888..27150
DNA (1263bp) protein (421aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1038924 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens SS101.;"
Sensor histidine kinase n=4 Tax=Pseudomonas RepID=I2BKJ4_PSEFL
sensor histidine kinase
L1_008_000G1_scaffold_17_20
Pseudomonas sp. RIT357, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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27143..27703
DNA (561bp) protein (187aa)
Two component transcriptional regulator n=6 Tax=Pseudomonas RepID=E2XLI0_PSEFL
DNA-binding response regulator, Fis family
DNA-binding response regulator {ECO:0000313|EMBL:EZP66934.1}; TaxID=1470593 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. RIT357.;"
L1_008_000G1_scaffold_17_21
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27803..29527
DNA (1725bp) protein (575aa)
ABC transporter, ATP-binding protein n=2 Tax=Pseudomonas RepID=I2BPH6_PSEFL
Uncharacterized protein {ECO:0000313|EMBL:AFJ56159.1}; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506.;"
ABC transporter ATP-binding protein
L1_008_000G1_scaffold_17_22
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29723..30160)
DNA (438bp) protein (146aa)
Uncharacterized protein n=7 Tax=Pseudomonas RepID=I2BVV6_PSEFL
hypothetical protein
Cytochrome d ubiquinol oxidase subunit III (Cytochrome bd-I oxidase subunit III) {ECO:0000313|EMBL:ERH58389.1}; TaxID=1390371 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens EGD-AQ6.;"
L1_008_000G1_scaffold_17_23
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30307..30936
DNA (630bp) protein (210aa)
Uncharacterized protein n=3 Tax=Pseudomonas RepID=I2BTQ1_PSEFL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFJ57634.1}; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506.;"
L1_008_000G1_scaffold_17_24
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30953..32308
DNA (1356bp) protein (452aa)
trpS; tryptophanyl-tRNA synthetase (EC:6.1.1.2)
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00140}; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506.;"
Tryptophan--tRNA ligase n=1 Tax=Pseudomonas fluorescens A506 RepID=I2BXZ0_PSEFL
L1_008_000G1_scaffold_17_25
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32352..33482
DNA (1131bp) protein (377aa)
ATPase, AFG1 family n=3 Tax=Pseudomonas RepID=I2BVN9_PSEFL
ATPase
Cell division protein ZapE {ECO:0000256|HAMAP-Rule:MF_01919}; Z ring-associated protein ZapE {ECO:0000256|HAMAP-Rule:MF_01919}; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506.;"
L1_008_000G1_scaffold_17_26
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33621..34616)
DNA (996bp) protein (332aa)
Putative AraC family regulatory protein n=1 Tax=Pseudomonas sp. CF150 RepID=S6KVB6_9PSED
AraC family transcriptional regulator
Uncharacterized protein {ECO:0000313|EMBL:AFJ57716.1}; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506.;"
L1_008_000G1_scaffold_17_27
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34762..35898
DNA (1137bp) protein (379aa)
acyl-CoA dehydrogenase (EC:1.3.99.3)
Acyl-CoA dehydrogenase-like protein n=2 Tax=Pseudomonas RepID=S6IVZ1_9PSED
Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
L1_008_000G1_scaffold_17_28
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36043..37146)
DNA (1104bp) protein (368aa)
Putative oxidoreductase, starvation associated protein Tas n=1 Tax=Pseudomonas fluorescens A506 RepID=I2BSJ5_PSEFL
tas; oxidoreductase, starvation associated protein Tas
Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
L1_008_000G1_scaffold_17_29
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


37334..37762
DNA (429bp) protein (143aa)
50S ribosomal protein L13 n=6 Tax=Pseudomonas RepID=RL13_PSEFS
50S ribosomal protein L13
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|RuleBase:RU003878}; TaxID=1390371 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens EGD-AQ6.;"
L1_008_000G1_scaffold_17_30
Pseudomonas syringae, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


37777..38169
DNA (393bp) protein (131aa)
30S ribosomal protein S9 n=60 Tax=Pseudomonas RepID=RS9_PSE14
rpsI; 30S ribosomal protein S9
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=629262 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas syringae.;" source="Pseudomonas syringae pv. japonica str. M301072.;"
Displaying items 1-30 of 251 in total

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