ggKbase home page

L1_008_000G1_scaffold_32

Search features with annotation key words

Displaying items 181-210 of 219 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000G1_scaffold_32_181
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

209935..210681
DNA (747bp) protein (249aa)
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFM41150.1}; EC=3.6.3.- {ECO:0000313|EMBL:EFM41150.1};; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
amino acid transport ATP-binding protein (EC:3.6.3.30)
ABC transporter, ATP-binding protein n=2 Tax=Bifidobacterium dentium RepID=E0Q8K8_9BIFI
L1_008_000G1_scaffold_32_182
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(210786..212003)
DNA (1218bp) protein (406aa)
ribF; riboflavin kinase/FMN adenylyltransferase (EC:2.7.7.2)
Riboflavin kinase {ECO:0000313|EMBL:EFM41151.1}; EC=2.7.7.2 {ECO:0000313|EMBL:EFM41151.1};; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
Riboflavin kinase n=2 Tax=Bifidobacterium dentium RepID=E0Q8K9_9BIFI
L1_008_000G1_scaffold_32_183
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(212000..213124)
DNA (1125bp) protein (375aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
tRNA pseudouridine synthase B n=2 Tax=Bifidobacterium dentium RepID=E0Q8L0_9BIFI
truB; tRNA pseudouridine synthase B
L1_008_000G1_scaffold_32_184
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(213069..213578)
DNA (510bp) protein (170aa)
Ribosome-binding factor A n=2 Tax=Bifidobacterium dentium RepID=E0Q8L1_9BIFI
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
rbfA; ribosome-binding factor A
L1_008_000G1_scaffold_32_185
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(213683..216502)
DNA (2820bp) protein (940aa)
if2; translation initiation factor IF-2 (EC:2.7.7.4)
Translation initiation factor IF-2 n=3 Tax=Bifidobacterium dentium RepID=E0Q8L2_9BIFI
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
L1_008_000G1_scaffold_32_186
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(216713..217753)
DNA (1041bp) protein (347aa)
Transcription termination factor NusA n=2 Tax=Bifidobacterium dentium RepID=E0Q8L3_9BIFI
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
nusA; N utilization substance protein A
L1_008_000G1_scaffold_32_187
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

217913..218692
DNA (780bp) protein (260aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=E0Q8L4_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:EFM41156.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
hypothetical protein
L1_008_000G1_scaffold_32_188
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(218958..219758)
DNA (801bp) protein (267aa)
Transglutaminase-like protein n=3 Tax=Bifidobacterium dentium RepID=B1S6D7_9BIFI
hypothetical protein
Transglutaminase-like protein {ECO:0000313|EMBL:ETO98264.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
L1_008_000G1_scaffold_32_189
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(219859..222039)
DNA (2181bp) protein (727aa)
Uncharacterized protein n=4 Tax=Bifidobacterium dentium RepID=B1S6D9_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:EFM41158.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
hypothetical protein
L1_008_000G1_scaffold_32_190
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(222238..223071)
DNA (834bp) protein (278aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
rplQ; 50S ribosomal protein L17 (EC:5.4.99.12)
tRNA pseudouridine synthase A n=1 Tax=Bifidobacterium dentium ATCC 27679 RepID=E0Q8L7_9BIFI
L1_008_000G1_scaffold_32_191
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(223230..223727)
DNA (498bp) protein (166aa)
50S ribosomal protein L17 n=2 Tax=Bifidobacterium dentium RepID=E0Q8L8_9BIFI
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
50S ribosomal protein L17
L1_008_000G1_scaffold_32_192
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(223817..224812)
DNA (996bp) protein (332aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 /; Bd1).;"
DNA-directed RNA polymerase subunit alpha n=4 Tax=Bifidobacterium dentium RepID=D2Q8J6_BIFDB
polA; polA DNA-directed RNA polymerase subunit alpha
L1_008_000G1_scaffold_32_193
Bifidobacterium merycicum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(224893..225291)
DNA (399bp) protein (133aa)
30S ribosomal protein S11 n=5 Tax=Bifidobacterium RepID=D2Q8J5_BIFDB
rpsK; 30S ribosomal protein S11P
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=78345 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium merycicum.;"
L1_008_000G1_scaffold_32_194
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(225364..225714)
DNA (351bp) protein (117aa)
30S ribosomal protein S13 n=16 Tax=Bifidobacterium RepID=RS13_BIFAA
30S ribosomal protein S13
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
L1_008_000G1_scaffold_32_195
Gardnerella vaginalis, Gardnerella, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(225851..225964)
DNA (114bp) protein (38aa)
50S ribosomal protein L36 n=17 Tax=Bifidobacteriaceae RepID=D2Q8J3_BIFDB
rpmJ; 50S ribosomal protein L36P
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; TaxID=1009464 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Gardnerella.;" source="Gardnerella vaginalis (strain HMP9231).;"
L1_008_000G1_scaffold_32_196
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(225987..226205)
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=39 Tax=root RepID=IF1_BIFAA
infA; protein translation initiation factor 1 InfA
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L1_008_000G1_scaffold_32_197
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(226351..226911)
DNA (561bp) protein (187aa)
adk; adk adenylate kinase (EC:2.7.4.3)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
Adenylate kinase n=4 Tax=Bifidobacterium dentium RepID=D2Q8J1_BIFDB
L1_008_000G1_scaffold_32_198
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(226933..228270)
DNA (1338bp) protein (446aa)
Protein translocase subunit SecY n=3 Tax=Bifidobacterium dentium RepID=B1S6E8_9BIFI
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
secY; secY protein translocase subunit secY
L1_008_000G1_scaffold_32_199
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(228498..228944)
DNA (447bp) protein (149aa)
50S ribosomal protein L15 n=4 Tax=Bifidobacterium dentium RepID=D2Q8I9_BIFDB
rplO; 50S ribosomal protein L15
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
L1_008_000G1_scaffold_32_200
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(228947..229129)
DNA (183bp) protein (61aa)
50S ribosomal protein L30 n=4 Tax=Bifidobacterium dentium RepID=D2Q8I8_BIFDB
rpmD; 50S ribosomal protein L30
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
L1_008_000G1_scaffold_32_201
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(229129..229860)
DNA (732bp) protein (244aa)
30S ribosomal protein S5 n=2 Tax=Bifidobacterium dentium RepID=E0Q8M8_9BIFI
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
rpsE; 30S ribosomal protein S5
L1_008_000G1_scaffold_32_202
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(229857..230228)
DNA (372bp) protein (124aa)
50S ribosomal protein L18 n=4 Tax=Bifidobacterium dentium RepID=D2Q8I6_BIFDB
rplR; 50S ribosomal protein L18
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 /; Bd1).;"
L1_008_000G1_scaffold_32_203
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(230230..230769)
DNA (540bp) protein (180aa)
50S ribosomal protein L6 n=4 Tax=Bifidobacterium dentium RepID=D2Q8I5_BIFDB
rplF; 50S ribosomal protein L6
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
L1_008_000G1_scaffold_32_204
Bifidobacterium moukalabense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(230787..231164)
DNA (378bp) protein (126aa)
30S ribosomal protein S8 n=8 Tax=Bifidobacterium RepID=RS8_BIFAA
30S ribosomal protein S8
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=1435051 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium moukalabense DSM 27321.;"
L1_008_000G1_scaffold_32_205
Bifidobacterium tsurumiense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(231224..231409)
DNA (186bp) protein (62aa)
30S ribosomal protein S14 type Z n=14 Tax=Bifidobacteriaceae RepID=RS14Z_BIFAA
30S ribosomal protein S14-1
30S ribosomal protein S14 type Z {ECO:0000256|HAMAP-Rule:MF_01364, ECO:0000256|SAAS:SAAS00014984}; TaxID=356829 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium tsurumiense.;"
L1_008_000G1_scaffold_32_206
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(231411..231983)
DNA (573bp) protein (191aa)
50S ribosomal protein L5 n=4 Tax=Bifidobacterium dentium RepID=D2Q8I2_BIFDB
rplE; 50S ribosomal protein L5
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333, ECO:0000256|RuleBase:RU003931}; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 /; Bd1).;"
L1_008_000G1_scaffold_32_207
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(231980..232315)
DNA (336bp) protein (112aa)
50S ribosomal protein L24 n=4 Tax=Bifidobacterium dentium RepID=D2Q8I1_BIFDB
rplX; 50S ribosomal protein L24
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
L1_008_000G1_scaffold_32_208
Bifidobacterium moukalabense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(232581..232841)
DNA (261bp) protein (87aa)
30S ribosomal protein S17 n=4 Tax=Bifidobacterium dentium RepID=D2Q8H9_BIFDB
rpsQ; 30S ribosomal protein S17
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; TaxID=1435051 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium moukalabense DSM 27321.;"
L1_008_000G1_scaffold_32_209
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(232841..233098)
DNA (258bp) protein (86aa)
50S ribosomal protein L29 n=7 Tax=Bacteria RepID=A1A077_BIFAA
rpmC; 50S ribosomal protein L29
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=367928 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC; 11814 / E194a).;"
L1_008_000G1_scaffold_32_210
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(233098..233517)
DNA (420bp) protein (140aa)
50S ribosomal protein L16 n=4 Tax=Bifidobacterium dentium RepID=D2Q8H7_BIFDB
rplP; 50S ribosomal protein L16
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
Displaying items 181-210 of 219 in total

View Taxonomy