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L1_008_000G1_scaffold_54

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Displaying items 1-30 of 180 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000G1_scaffold_54_1
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

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340..2982
DNA (2643bp) protein (881aa)
Membrane protein, putative n=3 Tax=Pseudomonas RepID=I2BUQ0_PSEFL
membrane protein
Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
L1_008_000G1_scaffold_54_2
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2982..4262
DNA (1281bp) protein (427aa)
Virulence protein, VirJ family n=2 Tax=Pseudomonas RepID=I2BRY4_PSEFL
virulence protein, VirJ family
Uncharacterized protein {ECO:0000313|EMBL:AFJ57017.1}; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506.;"
L1_008_000G1_scaffold_54_3
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4398..6107)
DNA (1710bp) protein (570aa)
recJ; single-stranded-DNA-specific exonuclease RecJ (EC:3.1.-.-)
RecJ protein {ECO:0000313|EMBL:AFJ56394.1}; EC=3.1.-.- {ECO:0000313|EMBL:AFJ56394.1};; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506.;"
Single-stranded-DNA-specific exonuclease RecJ n=3 Tax=Pseudomonas RepID=I2BQ61_PSEFL
L1_008_000G1_scaffold_54_4
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6265..6807)
DNA (543bp) protein (181aa)
Uncharacterized protein n=6 Tax=Pseudomonas RepID=C3K1B3_PSEFS
YaeQ protein
YaeQ family protein {ECO:0000313|EMBL:EIK63353.1}; TaxID=1038924 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens SS101.;"
L1_008_000G1_scaffold_54_5
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6945..8144
DNA (1200bp) protein (400aa)
Putative transferase n=1 Tax=Pseudomonas sp. CFT9 RepID=S6HBU9_9PSED
CoA-transferase, family III
Uncharacterized protein {ECO:0000313|EMBL:AFJ55634.1}; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506.;"
L1_008_000G1_scaffold_54_6
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8317..8601)
DNA (285bp) protein (95aa)
Uncharacterized protein n=2 Tax=Pseudomonas RepID=I4K5G7_PSEFL
Uncharacterized protein {ECO:0000313|EMBL:EIK59957.1}; TaxID=1038924 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens SS101.;"
hypothetical protein
L1_008_000G1_scaffold_54_7
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8809..9471
DNA (663bp) protein (221aa)
DNA-binding response regulator, LuxR family n=2 Tax=Pseudomonas fluorescens RepID=I2BSQ2_PSEFL
LuxR family DNA-binding response regulator
Uncharacterized protein {ECO:0000313|EMBL:AFJ57285.1}; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506.;"
L1_008_000G1_scaffold_54_8
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9440..10684)
DNA (1245bp) protein (415aa)
Response regulator/EAL domain protein n=2 Tax=Pseudomonas RepID=I2BLT2_PSEFL
response regulator/EAL domain protein
Uncharacterized protein {ECO:0000313|EMBL:AFJ55215.1}; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506.;"
L1_008_000G1_scaffold_54_9
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10961..14533)
DNA (3573bp) protein (1191aa)
Sensory box histidine kinase/response regulator n=1 Tax=Pseudomonas sp. CFT9 RepID=S6HFU6_9PSED
sensory box histidine kinase/response regulator
Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
L1_008_000G1_scaffold_54_10
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14798..16207)
DNA (1410bp) protein (470aa)
thrC; threonine synthase (EC:4.2.3.1)
ThrC protein {ECO:0000313|EMBL:AFJ56795.1}; EC=4.2.3.1 {ECO:0000313|EMBL:AFJ56795.1};; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506.;"
Threonine synthase n=3 Tax=Pseudomonas RepID=I2BRB2_PSEFL
L1_008_000G1_scaffold_54_11
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16275..17579)
DNA (1305bp) protein (435aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=1038924 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens SS101.;"
Homoserine dehydrogenase (EC:1.1.1.3)
Homoserine dehydrogenase n=1 Tax=Pseudomonas fluorescens SS101 RepID=I4KFI0_PSEFL
L1_008_000G1_scaffold_54_12
Pseudomonas synxantha, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(17708..18439)
DNA (732bp) protein (244aa)
dsbC; thiol:disulfide interchange protein DsbC (EC:5.3.4.1)
Thiol:disulfide interchange protein DsbC {ECO:0000313|EMBL:EIK71945.1}; EC=5.3.4.1 {ECO:0000313|EMBL:EIK71945.1};; TaxID=96901 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas synxantha BG33R.;"
Thiol:disulfide interchange protein DsbC n=4 Tax=Pseudomonas RepID=I2BMU8_PSEFL
L1_008_000G1_scaffold_54_13
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18588..19484)
DNA (897bp) protein (299aa)
Tyrosine recombinase XerD n=2 Tax=Pseudomonas RepID=I2BK89_PSEFL
xerD; tyrosine recombinase XerD
Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
L1_008_000G1_scaffold_54_14
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19592..21400
DNA (1809bp) protein (603aa)
Transporter, monovalent cation:proton antiporter-2 (CPA2) family n=2 Tax=Pseudomonas RepID=I2BZF9_PSEFL
Uncharacterized protein {ECO:0000313|EMBL:AFJ59642.1}; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506.;"
transporter, monovalent cation:proton antiporter-2 (CPA2) family
L1_008_000G1_scaffold_54_15
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21401..21814)
DNA (414bp) protein (138aa)
Thioesterase family protein n=4 Tax=Pseudomonas RepID=I2BWZ7_PSEFL
thioesterase family protein
Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
L1_008_000G1_scaffold_54_16
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(21897..22247)
DNA (351bp) protein (117aa)
50S ribosomal protein L19 n=41 Tax=Pseudomonas RepID=RL19_PSEFS
50S ribosomal protein L19
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=1038922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens Q2-87.;"
L1_008_000G1_scaffold_54_17
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22293..23045)
DNA (753bp) protein (251aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506.;"
tRNA (guanine-N(1)-)-methyltransferase n=4 Tax=Pseudomonas RepID=I2BUL0_PSEFL
trmD; tRNA (guanine-N1)-methyltransferase
L1_008_000G1_scaffold_54_18
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23048..23584)
DNA (537bp) protein (179aa)
Ribosome maturation factor RimM n=8 Tax=Pseudomonas RepID=E2XXK4_PSEFL
rimM; 16S rRNA processing protein RimM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506.;"
L1_008_000G1_scaffold_54_19
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(23590..23841)
DNA (252bp) protein (84aa)
30S ribosomal protein S16 n=8 Tax=Pseudomonas RepID=RS16_PSEFS
rpsP; 30S ribosomal protein S16
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1038924 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens SS101.;"
L1_008_000G1_scaffold_54_20
Pseudomonas sp. RIT357, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(24093..25469)
DNA (1377bp) protein (459aa)
Signal recognition particle protein n=5 Tax=Pseudomonas RepID=I2BPR5_PSEFL
signal recognition particle protein
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1470593 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. RIT357.;"
L1_008_000G1_scaffold_54_21
Pseudomonas synxantha, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25702..26514
DNA (813bp) protein (271aa)
Cytochrome C assembly protein n=4 Tax=Pseudomonas RepID=I2BKM5_PSEFL
cytochrome C assembly protein
Cytochrome c assembly protein {ECO:0000313|EMBL:EIK72137.1}; TaxID=96901 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas synxantha BG33R.;"
L1_008_000G1_scaffold_54_22
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26527..27765
DNA (1239bp) protein (413aa)
Uncharacterized protein n=3 Tax=Pseudomonas RepID=I2BM86_PSEFL
hypothetical protein
Putative membrane protein, PF01595 family/CBS domain/transporter-associated domain protein {ECO:0000313|EMBL:EIK60148.1}; TaxID=1038924 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens SS101.;"
L1_008_000G1_scaffold_54_23
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28131..29441
DNA (1311bp) protein (437aa)
Transporter, major facilitator family n=4 Tax=Pseudomonas RepID=I2BWJ9_PSEFL
major facilitator family transporter
Uncharacterized protein {ECO:0000313|EMBL:AFJ58632.1}; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506.;"
L1_008_000G1_scaffold_54_24
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29563..30744)
DNA (1182bp) protein (394aa)
purT; phosphoribosylglycinamide formyltransferase 2 (EC:2.1.2.-)
Phosphoribosylglycinamide formyltransferase 2 {ECO:0000255|HAMAP-Rule:MF_01643}; Short=GART 2 {ECO:0000255|HAMAP-Rule:MF_01643};; EC=2.1.2.- {ECO:0000255|HAMAP-Rule:MF_01643};; 5'-phosphoribosylglycinamide transformylase 2 {ECO:0000255|HAMAP-Rule:MF_01643}; Formate-dependent GAR transformylase {ECO:0000255|HAMAP-Rule:MF_01643}; GAR transformylase 2 {ECO:0000255|HAMAP-Rule:MF_01643}; TaxID=216595 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain SBW25).;"
Phosphoribosylglycinamide formyltransferase 2 n=2 Tax=Pseudomonas fluorescens RepID=PURT_PSEFS
L1_008_000G1_scaffold_54_25
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30815..31282)
DNA (468bp) protein (156aa)
Uncharacterized protein n=3 Tax=Pseudomonas RepID=I2BY50_PSEFL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFJ59183.1}; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506.;"
L1_008_000G1_scaffold_54_26
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31431..31646)
DNA (216bp) protein (72aa)
Uncharacterized protein n=2 Tax=Pseudomonas RepID=I2BZS5_PSEFL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFJ59758.1}; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506.;"
L1_008_000G1_scaffold_54_27
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31643..32164)
DNA (522bp) protein (174aa)
Transferase hexapeptide repeat-containing protein n=3 Tax=Pseudomonas RepID=I2BU22_PSEFL
transferase
Uncharacterized protein {ECO:0000313|EMBL:AFJ57755.1}; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506.;"
L1_008_000G1_scaffold_54_28
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32200..32802)
DNA (603bp) protein (201aa)
Hydrolase, NUDIX family n=3 Tax=Pseudomonas RepID=I2BZ82_PSEFL
NUDIX family hydrolase
Uncharacterized protein {ECO:0000313|EMBL:AFJ59565.1}; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506.;"
L1_008_000G1_scaffold_54_29
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32950..33498
DNA (549bp) protein (183aa)
Hydrolase, NUDIX family protein n=4 Tax=Pseudomonas RepID=I2BTH3_PSEFL
NUDIX family hydrolase
Uncharacterized protein {ECO:0000313|EMBL:AFJ57556.1}; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506.;"
L1_008_000G1_scaffold_54_30
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33535..34038
DNA (504bp) protein (168aa)
ErfK/YbiS/YcfS/YnhG family protein n=3 Tax=Pseudomonas RepID=I2BQV2_PSEFL
ErfK/YbiS/YcfS/YnhG family protein
Uncharacterized protein {ECO:0000313|EMBL:AFJ56635.1}; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506.;"
Displaying items 1-30 of 180 in total

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