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L1_008_000G1_scaffold_80

Search features with annotation key words

Displaying items 1-30 of 154 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000G1_scaffold_80_1
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

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231..539
DNA (309bp) protein (103aa)
50S ribosomal protein L21 n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FNG5_9CLOT
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
LSU ribosomal protein L21P
L1_008_000G1_scaffold_80_2
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

552..884
DNA (333bp) protein (111aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FNG4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22154.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Predicted ribosomal protein
L1_008_000G1_scaffold_80_3
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


889..1173
DNA (285bp) protein (95aa)
50S ribosomal protein L27 n=2 Tax=Clostridium RepID=B6FNG3_9CLOT
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
LSU ribosomal protein L27P
L1_008_000G1_scaffold_80_4
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1288..2571
DNA (1284bp) protein (428aa)
GTPase Obg n=1 Tax=Clostridium nexile CAG:348 RepID=R6QJN3_9CLOT
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Obg family GTPase CgtA
L1_008_000G1_scaffold_80_5
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2587..2877
DNA (291bp) protein (97aa)
RNA-binding protein, YhbY family n=2 Tax=Clostridium RepID=B6FNG1_9CLOT
RNA-binding protein, YhbY family {ECO:0000313|EMBL:EEA82453.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
conserved hypothetical protein TIGR00253
L1_008_000G1_scaffold_80_6
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2901..3533
DNA (633bp) protein (211aa)
Probable nicotinate-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; EC=2.7.7.18 {ECO:0000256|HAMAP-Rule:MF_00244};; Deamido-NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Deamido-NAD(+) pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Nicotinate mononucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
nicotinate (nicotinamide) nucleotide adenylyltransferase (EC:2.7.7.18)
Probable nicotinate-nucleotide adenylyltransferase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FNG0_9CLOT
L1_008_000G1_scaffold_80_7
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3511..4089
DNA (579bp) protein (193aa)
Hydrolase, HD family n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FNF9_9CLOT
Hydrolase, HD family {ECO:0000313|EMBL:EEA82451.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
putative nicotinate-nucleotide adenylyltransferase
L1_008_000G1_scaffold_80_8
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4092..4442
DNA (351bp) protein (117aa)
Ribosomal silencing factor RsfS n=2 Tax=Clostridium RepID=B6FNF8_9CLOT
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
iojap-related protein
L1_008_000G1_scaffold_80_9
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4479..5918)
DNA (1440bp) protein (480aa)
Aldehyde dehydrogenase (NAD) family protein {ECO:0000313|EMBL:EEA82449.1}; EC=1.2.1.- {ECO:0000313|EMBL:EEA82449.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
gapN; glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.9)
Aldehyde dehydrogenase (NAD) family protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FNF7_9CLOT
L1_008_000G1_scaffold_80_10
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6271..6888)
DNA (618bp) protein (206aa)
LexA repressor {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|RuleBase:RU003992}; EC=3.4.21.88 {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|RuleBase:RU003992};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
LexA repressor n=2 Tax=Clostridium RepID=B6FNF6_9CLOT
transcriptional repressor, LexA family protein
L1_008_000G1_scaffold_80_11
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7150..7443
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 PF08_9CLOT">RepID=R6PF08_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22145.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L1_008_000G1_scaffold_80_12
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7623..8693
DNA (1071bp) protein (357aa)
Phage integrase SAM-like domain protein n=2 Tax=Clostridium RepID=B6FNF4_9CLOT
Phage integrase SAM-like domain protein {ECO:0000313|EMBL:EEA82446.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Site-specific recombinase XerD
L1_008_000G1_scaffold_80_13
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8748..9194)
DNA (447bp) protein (149aa)
D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160054}; EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160046};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
D-tyrosyl-tRNA(Tyr) deacylase (EC:3.1.-.-)
D-tyrosyl-tRNA(Tyr) deacylase n=2 Tax=Clostridium RepID=B6FNF3_9CLOT
L1_008_000G1_scaffold_80_14
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9349..10083
DNA (735bp) protein (245aa)
PP-loop family protein n=2 Tax=Clostridium RepID=B6FNF2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22142.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
PP-loop domain-containing protein
L1_008_000G1_scaffold_80_15
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10129..10773)
DNA (645bp) protein (215aa)
Cytidylate kinase (EC:2.7.4.14)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FNF1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA82443.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L1_008_000G1_scaffold_80_16
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10876..11793)
DNA (918bp) protein (306aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Pseudouridine synthase, RluA family n=2 Tax=Clostridium RepID=B6FNF0_9CLOT
RluA family pseudouridine synthase
L1_008_000G1_scaffold_80_17
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11796..12338)
DNA (543bp) protein (181aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
lipoprotein signal peptidase (EC:3.4.23.36)
Lipoprotein signal peptidase n=1 Tax=Clostridium nexile CAG:348 RepID=R6PMR6_9CLOT
L1_008_000G1_scaffold_80_18
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12361..13116)
DNA (756bp) protein (252aa)
S4 domain protein n=2 Tax=Clostridium RepID=B6FNE8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22138.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Uncharacterized conserved protein, contains S4-like domain
L1_008_000G1_scaffold_80_19
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13127..13669)
DNA (543bp) protein (181aa)
Cell division protein SepF n=2 Tax=Clostridium RepID=B6FNE7_9CLOT
Cell division protein SepF {ECO:0000256|HAMAP-Rule:MF_01197}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L1_008_000G1_scaffold_80_20
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13696..14391)
DNA (696bp) protein (232aa)
Pyridoxal phosphate enzyme, YggS family n=2 Tax=Clostridium RepID=B6FNE6_9CLOT
Pyridoxal phosphate enzyme, YggS family {ECO:0000313|EMBL:EEA82438.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
pyridoxal phosphate enzyme, YggS family
L1_008_000G1_scaffold_80_21
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14407..15789)
DNA (1383bp) protein (461aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 PF00_9CLOT">RepID=R6PF00_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22135.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L1_008_000G1_scaffold_80_22
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15801..16748)
DNA (948bp) protein (316aa)
Radical SAM protein, TIGR01212 family n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FNE4_9CLOT
Radical SAM protein, TIGR01212 family {ECO:0000313|EMBL:EEA82436.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
radical SAM protein, TIGR01212 family
L1_008_000G1_scaffold_80_23
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16833..17039
DNA (207bp) protein (69aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FNE3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22133.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L1_008_000G1_scaffold_80_24
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17057..18031)
DNA (975bp) protein (325aa)
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FNE2_9CLOT
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:EEA82434.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
D-alanyl-D-alanine carboxypeptidase
L1_008_000G1_scaffold_80_25
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18015..18410)
DNA (396bp) protein (132aa)
Methylglyoxal synthase {ECO:0000256|HAMAP-Rule:MF_00549, ECO:0000256|SAAS:SAAS00089917}; Short=MGS {ECO:0000256|HAMAP-Rule:MF_00549};; EC=4.2.3.3 {ECO:0000256|HAMAP-Rule:MF_00549, ECO:0000256|SAAS:SAAS00089921};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
methylglyoxal synthase (EC:4.2.3.3)
Methylglyoxal synthase n=1 Tax=Clostridium nexile CAG:348 RepID=R6PUF9_9CLOT
L1_008_000G1_scaffold_80_26
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18423..19538)
DNA (1116bp) protein (372aa)
Cell cycle protein, FtsW/RodA/SpoVE family n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FNE0_9CLOT
Cell cycle protein, FtsW/RodA/SpoVE family {ECO:0000313|EMBL:EEA82432.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Bacterial cell division membrane protein
L1_008_000G1_scaffold_80_27
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19535..19765)
DNA (231bp) protein (77aa)
Cell division topological specificity factor MinE n=2 Tax=Clostridium RepID=B6FND9_9CLOT
Cell division topological specificity factor {ECO:0000256|SAAS:SAAS00085645}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Septum formation topological specificity factor MinE.
L1_008_000G1_scaffold_80_28
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19780..20571)
DNA (792bp) protein (264aa)
Site-determining protein n=2 Tax=Clostridium RepID=B6FND8_9CLOT
Site-determining protein {ECO:0000256|PIRNR:PIRNR003092}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
septum site-determining protein MinD
L1_008_000G1_scaffold_80_29
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20664..23570)
DNA (2907bp) protein (969aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QJK8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22127.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
pbpA1; penicillin-binding protein PbpA1
L1_008_000G1_scaffold_80_30
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23563..24081)
DNA (519bp) protein (173aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PUF4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22126.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
rod shape-determining protein MreD
Displaying items 1-30 of 154 in total

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