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L1_008_000G1_scaffold_383

Search features with annotation key words

Displaying items 1-30 of 74 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000G1_scaffold_383_1
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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64..534
DNA (471bp) protein (157aa)
Oxaloacetate decarboxylase beta subunit n=1 Tax=Clostridium sp. CAG:81 RepID=R5G110_9CLOT
Oxaloacetate decarboxylase beta subunit {ECO:0000313|EMBL:CCY10808.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
L1_008_000G1_scaffold_383_2
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

623..1684
DNA (1062bp) protein (354aa)
CAAX amino terminal protease family protein n=2 Tax=Roseburia RepID=C7GD25_9FIRM
Putative membrane spanning protein {ECO:0000313|EMBL:CDA54919.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
CAAX amino terminal protease family.
L1_008_000G1_scaffold_383_3
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1864..2016)
DNA (153bp) protein (51aa)
Uncharacterized protein n=3 Tax=Roseburia RepID=R6B781_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA54921.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_383_4
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2122..3228)
DNA (1107bp) protein (369aa)
Pectin methylesterase (EC:3.1.1.11)
Pectin methylesterase {ECO:0000313|EMBL:CBL11054.1}; EC=3.1.1.11 {ECO:0000313|EMBL:CBL11054.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Pectin methylesterase n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KUL4_9FIRM
L1_008_000G1_scaffold_383_5
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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3360..4088
DNA (729bp) protein (243aa)
Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases (EC:4.1.2.17)
Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases {ECO:0000313|EMBL:CBL11053.1}; EC=4.1.2.17 {ECO:0000313|EMBL:CBL11053.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KUL3_9FIRM
L1_008_000G1_scaffold_383_6
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4085..6199
DNA (2115bp) protein (705aa)
Type II secretory pathway, pullulanase PulA and related glycosidases (EC:3.2.1.-)
Type II secretory pathway, pullulanase PulA and related glycosidases n=3 Tax=Roseburia RepID=D4KNS4_9FIRM
Type II secretory pathway pullulanase PulA and related glycosidases {ECO:0000313|EMBL:CDA54925.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_383_7
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6224..6955)
DNA (732bp) protein (244aa)
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) (EC:1.1.1.100)
Dehydrogenases with different specificities (Related to short-chain alcohol dehydrogenases) {ECO:0000313|EMBL:CBL11051.1}; EC=1.1.1.100 {ECO:0000313|EMBL:CBL11051.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Dehydrogenases with different specificities (Related to short-chain alcohol dehydrogenases) n=4 Tax=Roseburia RepID=D4KUL1_9FIRM
L1_008_000G1_scaffold_383_8
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7342..8082
DNA (741bp) protein (247aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B1S9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA54929.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L1_008_000G1_scaffold_383_9
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8894..11011
DNA (2118bp) protein (706aa)
Methyl-accepting chemotaxis protein n=3 Tax=Roseburia RepID=D4KNS7_9FIRM
Methyl-accepting chemotaxis protein
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:CDA54930.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_383_10
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11120..11818
DNA (699bp) protein (233aa)
orotidine-5'-phosphate decarboxylase (EC:4.1.1.23)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01200, ECO:0000256|RuleBase:RU000512}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01200, ECO:0000256|RuleBase:RU000512};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01200}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Orotidine 5'-phosphate decarboxylase n=3 Tax=Roseburia RepID=D4KNS8_9FIRM
L1_008_000G1_scaffold_383_11
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11907..12635
DNA (729bp) protein (243aa)
TraX protein n=4 Tax=Roseburia RepID=D4KNS9_9FIRM
TraX protein.
TraX protein {ECO:0000313|EMBL:CBL11046.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000G1_scaffold_383_12
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12999..13919
DNA (921bp) protein (307aa)
Hydroxyethylthiazole kinase, sugar kinase family (EC:2.7.1.50)
Hydroxyethylthiazole kinase {ECO:0000256|HAMAP-Rule:MF_00228, ECO:0000256|SAAS:SAAS00137030}; EC=2.7.1.50 {ECO:0000256|HAMAP-Rule:MF_00228, ECO:0000256|SAAS:SAAS00137030};; 4-methyl-5-beta-hydroxyethylthiazole kinase {ECO:0000256|HAMAP-Rule:MF_00228}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Hydroxyethylthiazole kinase n=4 Tax=Roseburia RepID=D4KNT1_9FIRM
L1_008_000G1_scaffold_383_13
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13906..14544
DNA (639bp) protein (213aa)
thiamine-phosphate diphosphorylase (EC:2.5.1.3)
Thiamine-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; Short=TP synthase {ECO:0000256|HAMAP-Rule:MF_00097};; Short=TPS {ECO:0000256|HAMAP-Rule:MF_00097};; EC=2.5.1.3 {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826};; Thiamine-phosphate pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Thiamine-phosphate synthase n=2 Tax=Roseburia intestinalis RepID=D4KNT2_9FIRM
L1_008_000G1_scaffold_383_14
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14555..15304
DNA (750bp) protein (250aa)
HAD hydrolase, family IA, variant 3 n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GD12_9FIRM
HAD hydrolase, family IA, variant 3 {ECO:0000313|EMBL:EEV00319.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
L1_008_000G1_scaffold_383_15
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15407..15982
DNA (576bp) protein (192aa)
Sortase and related acyltransferases (EC:2.3.1.-)
Sortase and related acyltransferases n=4 Tax=Roseburia RepID=D4KNT4_9FIRM
Sortase and related acyltransferases {ECO:0000313|EMBL:CDA54936.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_383_16
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16027..17001
DNA (975bp) protein (325aa)
Mg2+ and Co2+ transporters n=4 Tax=Roseburia RepID=D4KNT5_9FIRM
Mg2+ and Co2+ transporters
Mg2+ and Co2+ transporters {ECO:0000313|EMBL:CBL08537.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000G1_scaffold_383_17
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17087..17947)
DNA (861bp) protein (287aa)
Predicted SAM-dependent methyltransferases n=2 Tax=Roseburia intestinalis RepID=D4KNT6_9FIRM
Predicted SAM-dependent methyltransferases
Predicted SAM-dependent methyltransferases {ECO:0000313|EMBL:CBL11040.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000G1_scaffold_383_18
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18020..19459)
DNA (1440bp) protein (480aa)
Trk-type K+ transport systems, membrane components n=3 Tax=Roseburia RepID=D4KNT7_9FIRM
Trk-type K+ transport systems, membrane components
Trk-type K+ transport systems membrane components {ECO:0000313|EMBL:CDA54939.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_383_19
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19466..20824)
DNA (1359bp) protein (453aa)
K+ transport systems, NAD-binding component n=2 Tax=Roseburia intestinalis RepID=D4KNT8_9FIRM
K+ transport systems, NAD-binding component
K+ transport systems, NAD-binding component {ECO:0000313|EMBL:CBL11038.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000G1_scaffold_383_20
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


21618..21935
DNA (318bp) protein (106aa)
30S ribosomal protein S10 n=3 Tax=Roseburia RepID=D4KNT9_9FIRM
SSU ribosomal protein S10P
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000G1_scaffold_383_21
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


22121..22804
DNA (684bp) protein (228aa)
50S ribosomal protein L3 n=4 Tax=Roseburia RepID=D4KNU0_9FIRM
LSU ribosomal protein L3P
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000G1_scaffold_383_22
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


22832..23452
DNA (621bp) protein (207aa)
50S ribosomal protein L4 n=4 Tax=Roseburia RepID=D4KNU1_9FIRM
LSU ribosomal protein L4P
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L1_008_000G1_scaffold_383_23
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


23452..23751
DNA (300bp) protein (100aa)
50S ribosomal protein L23 n=4 Tax=Roseburia RepID=D4KNU2_9FIRM
Ribosomal protein L23
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000G1_scaffold_383_24
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


23821..24666
DNA (846bp) protein (282aa)
50S ribosomal protein L2 n=4 Tax=Roseburia RepID=D4KNU3_9FIRM
LSU ribosomal protein L2P
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000G1_scaffold_383_25
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


24908..25189
DNA (282bp) protein (94aa)
30S ribosomal protein S19 n=3 Tax=Roseburia intestinalis RepID=D4KNU4_9FIRM
SSU ribosomal protein S19P
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L1_008_000G1_scaffold_383_26
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


25214..25600
DNA (387bp) protein (129aa)
50S ribosomal protein L22 n=3 Tax=Roseburia intestinalis RepID=D4KNU5_9FIRM
LSU ribosomal protein L22P
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000G1_scaffold_383_27
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


25612..26268
DNA (657bp) protein (219aa)
30S ribosomal protein S3 n=3 Tax=root RepID=D4KNU6_9FIRM
SSU ribosomal protein S3P
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_383_28
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


26268..26705
DNA (438bp) protein (146aa)
50S ribosomal protein L16 n=4 Tax=Roseburia RepID=D4KNU7_9FIRM
LSU ribosomal protein L16P
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_383_29
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


26695..26904
DNA (210bp) protein (70aa)
50S ribosomal protein L29 n=3 Tax=Roseburia intestinalis RepID=D4KNU8_9FIRM
LSU ribosomal protein L29P
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000G1_scaffold_383_30
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


26931..27188
DNA (258bp) protein (86aa)
30S ribosomal protein S17 n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GCZ6_9FIRM
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
30S ribosomal protein S17
Displaying items 1-30 of 74 in total

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