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L1_008_000G1_scaffold_574

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000G1_scaffold_574_1
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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487..1137
DNA (651bp) protein (217aa)
TetR/AcrR family transcriptional regulator n=3 Tax=Clostridium RepID=E7GH73_CLOSY
TetR/AcrR family transcriptional regulator {ECO:0000313|EMBL:EGA95851.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
Transcriptional regulator
L1_008_000G1_scaffold_574_2
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1234..2364
DNA (1131bp) protein (377aa)
Efflux transporter, RND family, MFP subunit n=3 Tax=Clostridium symbiosum RepID=U2DI31_CLOSY
Auxiliary transporter {ECO:0000313|EMBL:EGA95850.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
RND family efflux transporter, MFP subunit
L1_008_000G1_scaffold_574_3
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2377..5424
DNA (3048bp) protein (1016aa)
RND transporter, HAE1/HME family, permease protein n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SJS5_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF05376.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
Cation/multidrug efflux pump
L1_008_000G1_scaffold_574_4
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5718..6878
DNA (1161bp) protein (387aa)
Uncharacterized protein n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SJS6_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF05375.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
hypothetical protein
L1_008_000G1_scaffold_574_5
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6903..8180
DNA (1278bp) protein (426aa)
Uncharacterized protein n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SJS7_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF05374.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
Outer membrane efflux protein.
L1_008_000G1_scaffold_574_6
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8253..8990)
DNA (738bp) protein (246aa)
Putative stage II sporulation protein R n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SJS8_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF05373.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
stage II sporulation protein R
L1_008_000G1_scaffold_574_7
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9156..10223
DNA (1068bp) protein (356aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
D-alanine--D-alanine ligase (EC:6.3.2.4)
D-alanine--D-alanine ligase n=3 Tax=Clostridium RepID=E9SJS9_CLOSY
L1_008_000G1_scaffold_574_8
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10329..11156
DNA (828bp) protein (276aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
glutamate racemase (EC:5.1.1.3)
Glutamate racemase n=4 Tax=Clostridium RepID=U2C444_CLOSY
L1_008_000G1_scaffold_574_9
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11158..11604
DNA (447bp) protein (149aa)
Uncharacterized protein n=2 Tax=Clostridium symbiosum RepID=E9SJT1_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:ERI79279.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
hypothetical protein
L1_008_000G1_scaffold_574_10
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11951..12682
DNA (732bp) protein (244aa)
Transcription termination/antitermination factor NusG n=1 Tax=Clostridium symbiosum ATCC 14940 RepID=U2C5F7_CLOSY
Transcription termination/antitermination factor NusG {ECO:0000313|EMBL:ERI79278.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
NusG; transcription antiterminator
L1_008_000G1_scaffold_574_11
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12805..13950
DNA (1146bp) protein (382aa)
DegT/DnrJ/EryC1/StrS aminotransferase family protein n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SJT3_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF05368.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
putative PLP-dependent enzyme possibly involved in cell wall biogenesis
L1_008_000G1_scaffold_574_12
Bacillus cereus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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14035..14673
DNA (639bp) protein (213aa)
Bacterial sugar transferase n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SJT4_CLOSY
UDP-galactose phosphate transferase
UDP-galactose phosphate transferase {ECO:0000313|EMBL:AFQ09709.1}; TaxID=1217984 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group.;" source="Bacillus cereus FRI-35.;"
L1_008_000G1_scaffold_574_13
Odoribacter laneus, Odoribacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

14683..15693
DNA (1011bp) protein (337aa)
Glycosyltransferase, group 2 family protein n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SJT5_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHP49414.1}; TaxID=742817 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Odoribacter.;" source="Odoribacter laneus YIT 12061.;"
glycosyl transferase
L1_008_000G1_scaffold_574_14
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15680..16996
DNA (1317bp) protein (439aa)
Nucleotide sugar dehydrogenase n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SJT6_CLOSY
UDP-glucose/GDP-mannose dehydrogenase {ECO:0000313|EMBL:CCY90123.1}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
UDP-glucose/GDP-mannose dehydrogenase
L1_008_000G1_scaffold_574_15
Coprobacillus sp. 29_1, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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17005..17979
DNA (975bp) protein (325aa)
Nucleoside-diphosphate-sugar epimerases (EC:5.1.3.2)
NAD dependent epimerase/dehydratase family protein n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SJT7_CLOSY
NAD dependent epimerase/dehydratase {ECO:0000313|EMBL:EFW05239.1}; TaxID=469596 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 29_1.;"
L1_008_000G1_scaffold_574_16
Streptococcus suis, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

17983..19023
DNA (1041bp) protein (347aa)
Glycosyltransferase, group 2 family protein n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SJT8_CLOSY
Glycosyltransferase {ECO:0000313|EMBL:AKE79178.1}; TaxID=1307 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus suis.;"
glycoslytransferase
L1_008_000G1_scaffold_574_17
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18977..19870
DNA (894bp) protein (298aa)
Uncharacterized protein n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SJT9_CLOSY
Glycosyltransferase {ECO:0000313|EMBL:CEN21615.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
glycosyltransferase
L1_008_000G1_scaffold_574_18
unknown

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19882..21063
DNA (1182bp) protein (394aa)
O-antigen polymerase n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SJU0_CLOSY
L1_008_000G1_scaffold_574_19
Clostridium sp. CAG:575, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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21060..22187
DNA (1128bp) protein (376aa)
Uncharacterized protein n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SJU1_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:CDB31696.1}; TaxID=1262823 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:575.;"
polysaccharide pyruvyl transferase
L1_008_000G1_scaffold_574_20
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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22205..23611
DNA (1407bp) protein (469aa)
Polysaccharide biosynthesis protein n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SJU2_CLOSY
membrane protein involved in the export of O-antigen and teichoic acid
Membrane protein involved in the export of O-antigen and teichoic acid {ECO:0000313|EMBL:AGK95874.1}; TaxID=86416 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum BC1.;"
L1_008_000G1_scaffold_574_21
Coprococcus sp. CAG:131, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23646..24599
DNA (954bp) protein (318aa)
Nitroreductase family protein n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SJU3_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:CDB79787.1}; TaxID=1262862 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus sp. CAG:131.;"
hypothetical protein
L1_008_000G1_scaffold_574_22
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25453..25908)
DNA (456bp) protein (152aa)
Uncharacterized protein n=4 Tax=Clostridium RepID=E9SJU5_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF05433.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
hypothetical protein
L1_008_000G1_scaffold_574_23
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26637..27596
DNA (960bp) protein (320aa)
SIS domain protein n=1 Tax=Clostridium symbiosum ATCC 14940 RepID=U2DCU8_CLOSY
SIS domain protein {ECO:0000313|EMBL:ERI79257.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
Transcriptional regulators
L1_008_000G1_scaffold_574_24
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28096..29397
DNA (1302bp) protein (434aa)
Citrate transporter n=3 Tax=Clostridium RepID=E9SJU8_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF05428.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
Predicted permease
L1_008_000G1_scaffold_574_25
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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29539..30360
DNA (822bp) protein (274aa)
Hydrolase, carbon-nitrogen family n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SJU9_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF05427.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
Predicted amidohydrolase
L1_008_000G1_scaffold_574_26
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30368..31147
DNA (780bp) protein (260aa)
Beta-lactamase n=2 Tax=Clostridium RepID=U2C5E0_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF05426.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
hypothetical protein
L1_008_000G1_scaffold_574_27
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31357..32454
DNA (1098bp) protein (366aa)
Putative o-succinylbenzoate synthase n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SJV1_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF05425.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily
L1_008_000G1_scaffold_574_28
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32435..33613
DNA (1179bp) protein (393aa)
amidohydrolase (EC:3.5.1.14)
Amidohydrolase n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SJV2_CLOSY
Amidohydrolase {ECO:0000313|EMBL:EGA95934.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
L1_008_000G1_scaffold_574_29
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34007..37861
DNA (3855bp) protein (1285aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=2 Tax=Clostridium symbiosum RepID=E9SJV3_CLOSY
L1_008_000G1_scaffold_574_30
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37883..41530
DNA (3648bp) protein (1216aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SJV4_CLOSY
Displaying 30 items

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