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L1_008_000M1_scaffold_3004

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_3004_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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91..1932
DNA (1842bp) protein (614aa)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164, ECO:0000256|SAAS:SAAS00039584}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164};; D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; GFAT {ECO:0000256|HAMAP-Rule:MF_00164}; Glucosamine-6-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00164}; Hexosephosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; L-glutamine--D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
glutamine--fructose-6-phosphate transaminase (EC:2.6.1.16)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLW7_9FIRM
L1_008_000M1_scaffold_3004_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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2279..4309
DNA (2031bp) protein (677aa)
Polysaccharide biosynthesis protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLW6_9FIRM
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:EFB76414.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_008_000M1_scaffold_3004_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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4365..4994
DNA (630bp) protein (210aa)
Bacterial sugar transferase {ECO:0000313|EMBL:EFB76413.1}; EC=2.4.1.- {ECO:0000313|EMBL:EFB76413.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Bacterial sugar transferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLW5_9FIRM
hypothetical protein
L1_008_000M1_scaffold_3004_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5239..6324
DNA (1086bp) protein (362aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLW4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76412.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
transcriptional regulator, CdaR family
L1_008_000M1_scaffold_3004_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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6740..7498
DNA (759bp) protein (253aa)
Cell division ATP-binding protein FtsE n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMW8_9FIRM
Cell division ATP-binding protein FtsE {ECO:0000313|EMBL:EFB75903.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
cell division ATP-binding protein FtsE
L1_008_000M1_scaffold_3004_6

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7512..8408
DNA (897bp) protein (299aa)
Cell division protein FtsX n=1 Tax=human gut metagenome RepID=K1U472_9ZZZZ
Cell division protein FtsX {ECO:0000313|EMBL:EKC76998.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Cell division protein
L1_008_000M1_scaffold_3004_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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8488..9720
DNA (1233bp) protein (411aa)
Peptidase, M23 family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMW6_9FIRM
Peptidase, M23 family {ECO:0000313|EMBL:EFB75901.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Membrane proteins related to metalloendopeptidases
L1_008_000M1_scaffold_3004_8
unknown

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9807..9911
DNA (105bp) protein (35aa)

This feature has no annotations

L1_008_000M1_scaffold_3004_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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9958..11172
DNA (1215bp) protein (405aa)
Peptidase, S41 family {ECO:0000313|EMBL:EFB75900.1}; EC=3.4.21.- {ECO:0000313|EMBL:EFB75900.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Periplasmic protease (EC:3.4.21.102)
Peptidase, S41 family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMW5_9FIRM
L1_008_000M1_scaffold_3004_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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11242..12108
DNA (867bp) protein (289aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
dimethyladenosine transferase (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMW4_9FIRM
L1_008_000M1_scaffold_3004_11
[Eubacterium] cellulosolvens, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12577..13680)
DNA (1104bp) protein (368aa)
Uncharacterized protein n=1 Tax=Eubacterium cellulosolvens 6 RepID=I5AU76_EUBCE
Uncharacterized protein {ECO:0000313|EMBL:EIM57349.1}; TaxID=633697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] cellulosolvens 6.;"
L1_008_000M1_scaffold_3004_12

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comp(14044..14520)
DNA (477bp) protein (159aa)
Protein containing Helix-turn-helix type 3 domain protein (Fragment) n=1 Tax=human gut metagenome RepID=K1S4N0_9ZZZZ
Protein containing Helix-turn-helix type 3 domain protein {ECO:0000313|EMBL:EKC55582.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
helix-turn-helix domain-containing protein
L1_008_000M1_scaffold_3004_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15316..16326)
DNA (1011bp) protein (337aa)
Aspartate--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_00555, ECO:0000256|SAAS:SAAS00088413}; EC=6.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00555, ECO:0000256|SAAS:SAAS00088403};; Asparagine synthetase A {ECO:0000256|HAMAP-Rule:MF_00555}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
aspartate-ammonia ligase (EC:6.3.1.1)
Aspartate--ammonia ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMW3_9FIRM
L1_008_000M1_scaffold_3004_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16657..18429)
DNA (1773bp) protein (591aa)
ABC transporter, ATP-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMW2_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFB75897.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
multidrug ABC transporter ATPase and permease
L1_008_000M1_scaffold_3004_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18426..20165)
DNA (1740bp) protein (580aa)
ABC transporter, ATP-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMW1_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFB75896.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC-type multidrug transport system, ATPase and permease components
L1_008_000M1_scaffold_3004_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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20468..22759
DNA (2292bp) protein (764aa)
ATPase family associated with various cellular activities (AAA) n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMW0_9FIRM
ATPase family associated with various cellular activities (AAA) {ECO:0000313|EMBL:EFB75895.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ATPases with chaperone activity, ATP-binding subunit
L1_008_000M1_scaffold_3004_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23237..24613)
DNA (1377bp) protein (459aa)
UDP-N-acetylmuramate--L-alanine ligase {ECO:0000256|SAAS:SAAS00243344}; EC=6.3.2.8 {ECO:0000256|SAAS:SAAS00243344};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
UDP-N-acetylmuramate--L-alanine ligase (EC:6.3.2.8)
UDP-N-acetylmuramate--L-alanine ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLP2_9FIRM
L1_008_000M1_scaffold_3004_18
unknown

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24795..25028
DNA (234bp) protein (78aa)

This feature has no annotations

L1_008_000M1_scaffold_3004_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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25321..26742
DNA (1422bp) protein (474aa)
Glycine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00006545}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00015978};; Glycyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00253}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
glycyl-tRNA synthetase (EC:6.1.1.14)
Glycine--tRNA ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLP5_9FIRM
L1_008_000M1_scaffold_3004_20
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27537..28613
DNA (1077bp) protein (359aa)
Spermidine/putrescine import ATP-binding protein PotA {ECO:0000256|HAMAP-Rule:MF_01726}; EC=3.6.3.31 {ECO:0000256|HAMAP-Rule:MF_01726};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
spermidine/putrescine ABC transporter ATP-binding subunit (EC:3.6.3.31)
Polyamine ABC transporter, ATP-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMU5_9FIRM
L1_008_000M1_scaffold_3004_21
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28618..29439
DNA (822bp) protein (274aa)
ABC transporter, permease protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMU4_9FIRM
ABC transporter, permease protein {ECO:0000313|EMBL:EFB75879.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC-type spermidine/putrescine transport system, permease component I
L1_008_000M1_scaffold_3004_22
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29439..30281
DNA (843bp) protein (281aa)
ABC transporter, permease protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMU3_9FIRM
ABC transporter, permease protein {ECO:0000313|EMBL:EFB75878.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC-type spermidine/putrescine transport system, permease component II
L1_008_000M1_scaffold_3004_23
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30297..31547
DNA (1251bp) protein (417aa)
ABC transporter, solute-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMU2_9FIRM
ABC transporter, solute-binding protein {ECO:0000313|EMBL:EFB75877.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Spermidine/putrescine-binding periplasmic protein
L1_008_000M1_scaffold_3004_24
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31680..32426
DNA (747bp) protein (249aa)
Acyl-ACP thioesterase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMU1_9FIRM
Acyl-ACP thioesterase {ECO:0000313|EMBL:EFB75876.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Acyl-ACP thioesterase
L1_008_000M1_scaffold_3004_25

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comp(32862..33425)
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=human gut metagenome RepID=K1SXA7_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC59964.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L1_008_000M1_scaffold_3004_26

Not on your lists

comp(33828..34391)
DNA (564bp) protein (188aa)
NUDIX hydrolase (Fragment) n=1 Tax=human gut metagenome RepID=K1RLY0_9ZZZZ
NUDIX hydrolase {ECO:0000313|EMBL:EKC44544.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
NUDIX hydrolase
L1_008_000M1_scaffold_3004_27
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(34570..35739)
DNA (1170bp) protein (390aa)
Putative sporulation protein YqfD n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKL9_9FIRM
Putative sporulation protein YqfD {ECO:0000313|EMBL:EFB76527.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Putative stage IV sporulation protein YqfD.
L1_008_000M1_scaffold_3004_28
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35711..36049)
DNA (339bp) protein (113aa)
Putative sporulation protein YqfC n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKL8_9FIRM
Putative sporulation protein YqfC {ECO:0000313|EMBL:EFB76526.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
YabP family.
L1_008_000M1_scaffold_3004_29
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36131..37237
DNA (1107bp) protein (369aa)
Uncharacterized protein n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6PVX0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC27720.1}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
Nucleoside recognition.
L1_008_000M1_scaffold_3004_30
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37274..37495
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKL6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76524.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
Displaying items 1-30 of 43 in total

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