ggKbase home page

L1_008_000M1_scaffold_1051

Search features with annotation key words

Displaying items 1-30 of 69 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1051_1
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..924)
DNA (924bp) protein (308aa)
Hydroxylamine reductase {ECO:0000256|HAMAP-Rule:MF_00069, ECO:0000256|SAAS:SAAS00038686}; EC=1.7.99.1 {ECO:0000256|HAMAP-Rule:MF_00069, ECO:0000256|SAAS:SAAS00150119};; Hybrid-cluster protein {ECO:0000256|HAMAP-Rule:MF_00069}; Prismane protein {ECO:0000256|HAMAP-Rule:MF_00069}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
hydroxylamine reductase (EC:1.7.-.-)
Hydroxylamine reductase n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HQX2_9FIRM
L1_008_000M1_scaffold_1051_2
Firmicutes bacterium CAG:102, Firmicutes, Bacteria

Not on your lists

1086..1772
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:102 RepID=R5AKK0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX39856.1}; TaxID=1262998 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:102.;"
cAMP-binding protein
L1_008_000M1_scaffold_1051_3
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1860..2924
DNA (1065bp) protein (355aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K915_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN41001.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
Uncharacterized proteins, homologs of microcin C7 resistance protein MccF
L1_008_000M1_scaffold_1051_4
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3005..4360
DNA (1356bp) protein (452aa)
Transporter n=2 Tax=Eubacterium RepID=D4JJ66_9FIRM
Na+-dependent transporters of the SNF family
Transporter {ECO:0000256|RuleBase:RU003732}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
L1_008_000M1_scaffold_1051_5
unknown

Not on your lists

comp(4469..5233)
DNA (765bp) protein (255aa)

This feature has no annotations

L1_008_000M1_scaffold_1051_6
unknown

Not on your lists

comp(5718..5888)
DNA (171bp) protein (57aa)

This feature has no annotations

L1_008_000M1_scaffold_1051_7
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6048..7034
DNA (987bp) protein (329aa)
Ribose operon repressor n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HRA3_9FIRM
Ribose operon repressor {ECO:0000313|EMBL:CCY32288.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
Transcriptional regulators
L1_008_000M1_scaffold_1051_8
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7521..8777
DNA (1257bp) protein (419aa)
Putative bacterial extracellular solute-binding protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HVX8_9FIRM
Putative bacterial extracellular solute-binding protein {ECO:0000313|EMBL:CCY32289.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
capsular biosynthesis protein
L1_008_000M1_scaffold_1051_9
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8859..9809
DNA (951bp) protein (317aa)
Putative ABC-type sugar transport system permease component n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HRC9_9FIRM
Putative ABC-type sugar transport system permease component {ECO:0000313|EMBL:CCY32290.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
sugar ABC transporter permease
L1_008_000M1_scaffold_1051_10
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9809..10669
DNA (861bp) protein (287aa)
Sugar ABC transporter permease protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5I672_9FIRM
Sugar ABC transporter permease protein {ECO:0000313|EMBL:CCY32291.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)
L1_008_000M1_scaffold_1051_11
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10760..12649
DNA (1890bp) protein (630aa)
Glycosidases (EC:2.4.1.4 5.4.99.16)
amylosucrase n=1 Tax=Ruminococcus sp. JC304 RepID=UPI00031A349D
Alpha amylase catalytic domain protein {ECO:0000313|EMBL:CCY32293.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
L1_008_000M1_scaffold_1051_12
Eubacterium sp. CAG:146, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13076..13525
DNA (450bp) protein (150aa)
Transposase-like protein n=1 Tax=Eubacterium sp. CAG:146 RepID=R5GK66_9FIRM
Transposase-like protein {ECO:0000313|EMBL:CCY12941.1}; TaxID=1262879 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:146.;"
transposase IS200 family protein
L1_008_000M1_scaffold_1051_13
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13506..14681
DNA (1176bp) protein (392aa)
Transposase, IS605 family protein n=1 Tax=Bacillus alcalophilus ATCC 27647 RepID=J8QE57_BACAO
IS605 OrfB family transposase {ECO:0000313|EMBL:EQM98854.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
transposase, IS605 OrfB family
L1_008_000M1_scaffold_1051_14
Blautia sp. KLE 1732, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14885..16027)
DNA (1143bp) protein (381aa)
Isoaspartyl dipeptidase {ECO:0000256|PIRNR:PIRNR001238}; EC=3.4.19.- {ECO:0000256|PIRNR:PIRNR001238};; TaxID=1226324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia sp. KLE 1732.;"
isoaspartyl dipeptidase IadA (EC:3.4.19.5)
Isoaspartyl dipeptidase n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G2K5_9FIRM
L1_008_000M1_scaffold_1051_15
Clostridium sp. CAG:590, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16195..17202
DNA (1008bp) protein (336aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:590 RepID=R5E1L4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX86388.1}; TaxID=1262825 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:590.;"
hypothetical protein
L1_008_000M1_scaffold_1051_16
Firmicutes bacterium CAG:194, Firmicutes, Bacteria

Not on your lists

comp(17264..19051)
DNA (1788bp) protein (596aa)
Nitrogen regulatory protein P-II n=1 Tax=Firmicutes bacterium CAG:194 RepID=R5QL68_9FIRM
Nitrogen regulatory protein P-II {ECO:0000313|EMBL:CCZ29480.1}; TaxID=1263008 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:194.;"
amt; ammonium transporter
L1_008_000M1_scaffold_1051_17
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19394..20188
DNA (795bp) protein (265aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
murI; glutamate racemase (EC:5.1.1.3)
Glutamate racemase n=1 Tax=Roseburia sp. CAG:380 RepID=R6VVA8_9FIRM
L1_008_000M1_scaffold_1051_18
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20192..22045)
DNA (1854bp) protein (618aa)
Uncharacterized protein n=1 Tax=Clostridium hathewayi 12489931 RepID=N9X562_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY90826.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
glycerophosphoryl diester phosphodiesterase
L1_008_000M1_scaffold_1051_19
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22237..23547
DNA (1311bp) protein (437aa)
UPF0597 protein HMPREF0994_04673 n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KFP4_9FIRM
UPF0597 protein HMPREF0994_04673 {ECO:0000256|HAMAP-Rule:MF_01845}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
hypothetical protein
L1_008_000M1_scaffold_1051_20
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23922..25835
DNA (1914bp) protein (638aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:169 RepID=R6BF87_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA61830.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
ABC-type oligopeptide transport system, periplasmic component
L1_008_000M1_scaffold_1051_21
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25892..26389)
DNA (498bp) protein (166aa)
Transcriptional regulator, AsnC family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJT3_9FIRM
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:EFB77031.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
transcriptional regulator
L1_008_000M1_scaffold_1051_22
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

26947..28860
DNA (1914bp) protein (638aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RNU8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC44756.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
ABC-type oligopeptide transport system, periplasmic component
L1_008_000M1_scaffold_1051_23
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28864..29814
DNA (951bp) protein (317aa)
ABC-type dipeptide/oligopeptide/nickel transport systems permease components n=1 Tax=Clostridium sp. CAG:242 PF8_9CLOT">RepID=R6CPF8_9CLOT
ABC-type dipeptide/oligopeptide/nickel transport systems permease components {ECO:0000313|EMBL:CDA78558.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
L1_008_000M1_scaffold_1051_24
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29814..30740
DNA (927bp) protein (309aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:169 RepID=R6BC20_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA61728.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
L1_008_000M1_scaffold_1051_25
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30753..31793
DNA (1041bp) protein (347aa)
ABC transporter ATP-binding protein n=1 Tax=Clostridium sp. CAG:169 RepID=R6C8P7_9CLOT
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CDA61727.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
L1_008_000M1_scaffold_1051_26
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31807..32763
DNA (957bp) protein (319aa)
Oligopeptide transport ATP-binding protein AmiF n=1 Tax=Clostridium sp. CAG:242 RepID=R6CSF5_9CLOT
Oligopeptide transport ATP-binding protein AmiF {ECO:0000313|EMBL:CDA78555.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
ATPase components of various ABC-type transport systems, contain duplicated ATPase
L1_008_000M1_scaffold_1051_27
unknown

Not on your lists

32784..33218
DNA (435bp) protein (145aa)

This feature has no annotations

L1_008_000M1_scaffold_1051_28
Sphaerochaeta globosa, Sphaerochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

33311..34357
DNA (1047bp) protein (349aa)
Uncharacterized protein n=1 Tax=Sphaerochaeta globosa (strain ATCC BAA-1886 / DSM 22777 / Buddy) RepID=F0RU16_SPHGB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADY13875.1}; Flags: Precursor;; TaxID=158189 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Sphaerochaeta.;" source="Sphaerochaeta globosa (strain ATCC BAA-1886 / DSM 22777 / Buddy); (Spirochaeta sp. (strain Buddy)).;"
L1_008_000M1_scaffold_1051_29
Firmicutes bacterium CAG:882, Firmicutes, Bacteria

Not on your lists

34539..37031
DNA (2493bp) protein (831aa)
ABC-type transport system substrat-binding component n=1 Tax=Firmicutes bacterium CAG:882 RepID=R7BDI5_9FIRM
ABC-type transport system substrat-binding component {ECO:0000313|EMBL:CDD63497.1}; TaxID=1262991 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:882.;"
hypothetical protein
L1_008_000M1_scaffold_1051_30
Firmicutes bacterium CAG:882, Firmicutes, Bacteria

Not on your lists

37203..38153
DNA (951bp) protein (317aa)
ABC-type transport system permease component n=1 Tax=Firmicutes bacterium CAG:882 RepID=R7BCM6_9FIRM
ABC-type transport system permease component {ECO:0000313|EMBL:CDD63495.1}; TaxID=1262991 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:882.;"
hypothetical protein
Displaying items 1-30 of 69 in total

View Taxonomy