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L1_008_000M1_scaffold_1334

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1334_1
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

192..1064
DNA (873bp) protein (291aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
Pseudouridine synthase n=1 Tax=Clostridium sp. CAG:343 RepID=R6N2X0_9CLOT
pseudouridine synthase
L1_008_000M1_scaffold_1334_2
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1111..1431)
DNA (321bp) protein (107aa)
Thioredoxin n=1 Tax=Clostridium sp. CAG:343 RepID=R6P8W9_9CLOT
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
hypothetical protein
L1_008_000M1_scaffold_1334_3
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1433..2302)
DNA (870bp) protein (290aa)
thioredoxin-disulfide reductase (EC:1.8.1.9)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6NJC6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC06346.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
L1_008_000M1_scaffold_1334_4
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2469..2798)
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6N5L1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC06345.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
hypothetical protein
L1_008_000M1_scaffold_1334_5
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2818..3264)
DNA (447bp) protein (149aa)
Putative cell wall hydrolase n=1 Tax=Clostridium sp. CAG:343 RepID=R6NDE1_9CLOT
Putative cell wall hydrolase {ECO:0000313|EMBL:CDC06344.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
cell wall hydrolase
L1_008_000M1_scaffold_1334_6
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3377..4519)
DNA (1143bp) protein (381aa)
S-adenosylmethionine synthase {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541}; Short=AdoMet synthase {ECO:0000256|HAMAP-Rule:MF_00086};; EC=2.5.1.6 {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541};; MAT {ECO:0000256|HAMAP-Rule:MF_00086}; Methionine adenosyltransferase {ECO:0000256|HAMAP-Rule:MF_00086}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
S-adenosylmethionine synthetase (EC:2.5.1.6)
S-adenosylmethionine synthase n=1 Tax=Clostridium sp. CAG:343 RepID=R6N2W5_9CLOT
L1_008_000M1_scaffold_1334_7
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4526..5602)
DNA (1077bp) protein (359aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Clostridium sp. CAG:343 RepID=R6P8W5_9CLOT
trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
L1_008_000M1_scaffold_1334_8
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5626..6093)
DNA (468bp) protein (156aa)
SUF system FeS assembly protein NifU family n=1 Tax=Clostridium sp. CAG:343 RepID=R6NJC1_9CLOT
SUF system FeS assembly protein NifU family {ECO:0000313|EMBL:CDC06341.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
nifU2; NifU-like protein NifU
L1_008_000M1_scaffold_1334_9
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6118..7341)
DNA (1224bp) protein (408aa)
Cysteine desulfurase {ECO:0000256|SAAS:SAAS00062216}; EC=2.8.1.7 {ECO:0000256|SAAS:SAAS00062216};; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
csd2; putative cysteine desulfurase Csd (EC:2.8.1.7)
Cysteine desulfurase SufS subfamily n=1 Tax=Clostridium sp. CAG:343 RepID=R6N5K6_9CLOT
L1_008_000M1_scaffold_1334_10
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7344..8387)
DNA (1044bp) protein (348aa)
FeS assembly protein SufD n=1 Tax=Clostridium sp. CAG:343 RepID=R6NDD5_9CLOT
FeS assembly protein SufD {ECO:0000313|EMBL:CDC06339.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
FeS assembly protein SufD
L1_008_000M1_scaffold_1334_11
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8536..9948)
DNA (1413bp) protein (471aa)
FeS assembly protein SufB n=1 Tax=Clostridium sp. CAG:343 RepID=R6N2W0_9CLOT
FeS assembly protein SufB {ECO:0000313|EMBL:CDC06338.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
sufB; FeS cluster assembly protein SufB
L1_008_000M1_scaffold_1334_12
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9923..10669)
DNA (747bp) protein (249aa)
FeS assembly ATPase SufC n=1 Tax=Clostridium sp. CAG:343 RepID=R6P8W1_9CLOT
FeS assembly ATPase SufC {ECO:0000313|EMBL:CDC06337.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
FeS assembly ATPase SufC
L1_008_000M1_scaffold_1334_13
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10662..11132)
DNA (471bp) protein (157aa)
Iron-dependent transcriptional regulator n=1 Tax=Clostridium sp. CAG:343 RepID=R6NJB6_9CLOT
Iron-dependent transcriptional regulator {ECO:0000313|EMBL:CDC06336.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
Mn-dependent transcriptional regulator
L1_008_000M1_scaffold_1334_14
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11295..12044)
DNA (750bp) protein (250aa)
UBA/THIF-type NAD/FAD binding protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6N5K2_9CLOT
UBA/THIF-type NAD/FAD binding protein {ECO:0000313|EMBL:CDC06335.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
dinucleotide-utilizing enzyme
L1_008_000M1_scaffold_1334_15
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12046..12957)
DNA (912bp) protein (304aa)
tRNA and rRNA cytosine-C5-methylases n=1 Tax=Clostridium sp. CAG:343 RepID=R6NDD0_9CLOT
tRNA and rRNA cytosine-C5-methylases {ECO:0000313|EMBL:CDC06334.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
tRNA and rRNA cytosine-C5-methylases
L1_008_000M1_scaffold_1334_16
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13101..13451
DNA (351bp) protein (117aa)
PF06356 family protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6N2U3_9CLOT
PF06356 family protein {ECO:0000313|EMBL:CDC06333.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
hypothetical protein
L1_008_000M1_scaffold_1334_17
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13533..15257)
DNA (1725bp) protein (575aa)
AMP-binding enzyme n=1 Tax=Clostridium sp. CAG:343 RepID=R6P8V5_9CLOT
AMP-binding enzyme {ECO:0000313|EMBL:CDC06332.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
AMP-dependent synthetase and ligase
L1_008_000M1_scaffold_1334_18
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15370..15888
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6NJB0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC06331.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
hypothetical protein
L1_008_000M1_scaffold_1334_19
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16017..18143)
DNA (2127bp) protein (709aa)
anaerobic ribonucleoside-triphosphate reductase (EC:1.17.4.2)
Anaerobic ribonucleoside-triphosphate reductase n=1 Tax=Clostridium sp. CAG:343 RepID=R6N5J6_9CLOT
Anaerobic ribonucleoside-triphosphate reductase {ECO:0000313|EMBL:CDC06330.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
L1_008_000M1_scaffold_1334_20
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18432..19064
DNA (633bp) protein (211aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6NDC6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC06329.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
hypothetical protein
L1_008_000M1_scaffold_1334_21
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(19110..20438)
DNA (1329bp) protein (443aa)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00127}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
hisS; histidyl-tRNA synthetase (EC:6.1.1.21)
Histidine--tRNA ligase n=1 Tax=Clostridium sp. CAG:343 RepID=R6N2T8_9CLOT
L1_008_000M1_scaffold_1334_22
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20456..21103)
DNA (648bp) protein (216aa)
Hydroxyacylglutathione hydrolase n=1 Tax=Clostridium sp. CAG:343 RepID=R6P8U9_9CLOT
Hydroxyacylglutathione hydrolase {ECO:0000313|EMBL:CDC06327.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
beta-lactamase domain-containing protein
L1_008_000M1_scaffold_1334_23
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21139..23337)
DNA (2199bp) protein (733aa)
(p)ppGpp synthetase I SpoT/RelA (EC:2.7.6.5)
(P)ppGpp synthetase I SpoT/RelA n=1 Tax=Clostridium sp. CAG:343 RepID=R6NJA5_9CLOT
(P)ppGpp synthetase I SpoT/RelA {ECO:0000313|EMBL:CDC06326.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
L1_008_000M1_scaffold_1334_24
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23380..24660)
DNA (1281bp) protein (427aa)
exonuclease RecJ (EC:3.1.-.-)
Exonuclease RecJ n=1 Tax=Clostridium sp. CAG:343 RepID=R6N5I3_9CLOT
Exonuclease RecJ {ECO:0000313|EMBL:CDC06325.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
L1_008_000M1_scaffold_1334_25
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24807..25070)
DNA (264bp) protein (88aa)
Exonuclease RecJ n=1 Tax=Clostridium sp. CAG:343 RepID=R6N5I3_9CLOT
Exonuclease RecJ {ECO:0000313|EMBL:CDC06325.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
hypothetical protein
L1_008_000M1_scaffold_1334_26
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25218..25766)
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6NDC1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC06324.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
L1_008_000M1_scaffold_1334_27
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26113..26898
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6N2T2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC06323.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
hypothetical protein
L1_008_000M1_scaffold_1334_28
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26977..28563
DNA (1587bp) protein (529aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6P8U5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC06322.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
hypothetical protein
L1_008_000M1_scaffold_1334_29
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28743..29612
DNA (870bp) protein (290aa)
Sporulation protein YtxC n=1 Tax=Clostridium sp. CAG:343 RepID=R6NJA2_9CLOT
Sporulation protein YtxC {ECO:0000313|EMBL:CDC06321.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
Sporulation protein YtxC
L1_008_000M1_scaffold_1334_30
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29666..30487)
DNA (822bp) protein (274aa)
Group-specific protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6N5H7_9CLOT
Group-specific protein {ECO:0000313|EMBL:CDC06320.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
Displaying items 1-30 of 36 in total

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