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L1_008_000M1_scaffold_1459

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1459_1
unknown

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comp(1..93)
DNA (93bp) protein (31aa)

This feature has no annotations

L1_008_000M1_scaffold_1459_2
Coprobacillus sp. 8_2_54BFAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(77..280)
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Erysipelotrichaceae bacterium 6_1_45 RepID=H1B5T8_9FIRM
conjugative transposon site-specific recombinase
Uncharacterized protein {ECO:0000313|EMBL:EHQ46934.1}; TaxID=469597 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 8_2_54BFAA.;"
L1_008_000M1_scaffold_1459_3
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(384..569)
DNA (186bp) protein (62aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RPZ0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL74421.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L1_008_000M1_scaffold_1459_4
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(828..2177)
DNA (1350bp) protein (450aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RPZ1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL74422.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L1_008_000M1_scaffold_1459_5
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(2798..4270)
DNA (1473bp) protein (491aa)
Uncharacterized protein n=1 Tax=Erysipelotrichaceae bacterium 6_1_45 RepID=H1B5T5_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHO31696.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
L1_008_000M1_scaffold_1459_6
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4273..4578)
DNA (306bp) protein (102aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RPZ4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL74425.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L1_008_000M1_scaffold_1459_7
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4837..5079)
DNA (243bp) protein (81aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RPZ5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL74426.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L1_008_000M1_scaffold_1459_8
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5235..5459)
DNA (225bp) protein (75aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RPZ6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL74427.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
DNA binding domain-containing protein
L1_008_000M1_scaffold_1459_9
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5761..6810
DNA (1050bp) protein (350aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RPZ7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL74428.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L1_008_000M1_scaffold_1459_10
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7081..8184
DNA (1104bp) protein (368aa)
DNA (Cytosine-5-)-methyltransferase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RPZ8_9FIRM
DNA (Cytosine-5-)-methyltransferase {ECO:0000313|EMBL:EHL74429.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
DNA-cytosine methyltransferase
L1_008_000M1_scaffold_1459_11
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8177..9112
DNA (936bp) protein (312aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RPZ9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL74430.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L1_008_000M1_scaffold_1459_12
Treponema medium, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

9119..9553
DNA (435bp) protein (145aa)
T/G mismatch-specific endonuclease (EC:3.1.-.-)
DNA mismatch endonuclease Vsr n=1 Tax=Treponema medium ATCC 700293 RepID=S3KT97_TREMD
DNA mismatch endonuclease Vsr {ECO:0000313|EMBL:EPF27664.1}; TaxID=1125700 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema medium ATCC 700293.;"
L1_008_000M1_scaffold_1459_13
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9550..10629
DNA (1080bp) protein (360aa)
Cytosine-specific methyltransferase {ECO:0000256|RuleBase:RU000417}; EC=2.1.1.37 {ECO:0000256|RuleBase:RU000417};; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
Cytosine-specific methyltransferase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RQ00_9FIRM
DNA-cytosine methyltransferase
L1_008_000M1_scaffold_1459_14
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10604..12499
DNA (1896bp) protein (632aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RQ01_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL74432.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L1_008_000M1_scaffold_1459_15
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12593..12721)
DNA (129bp) protein (43aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:227 RepID=R6V316_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EGC04589.1}; TaxID=246199 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus 8.;"
transcriptional regulator
L1_008_000M1_scaffold_1459_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12905..16480)
DNA (3576bp) protein (1192aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL90_9FIRM
L1_008_000M1_scaffold_1459_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16525..20352)
DNA (3828bp) protein (1276aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL91_9FIRM
L1_008_000M1_scaffold_1459_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20860..22713)
DNA (1854bp) protein (618aa)
Asparagine synthase (Glutamine-hydrolyzing) {ECO:0000313|EMBL:EFB75769.1}; EC=6.3.5.4 {ECO:0000313|EMBL:EFB75769.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Asparagine synthetase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMI4_9FIRM
asparagine synthase
L1_008_000M1_scaffold_1459_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22880..23977)
DNA (1098bp) protein (366aa)
RNA polymerase sigma factor SigA n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL94_9FIRM
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase sigma factor, sigma-70 family
L1_008_000M1_scaffold_1459_20
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24057..25838)
DNA (1782bp) protein (594aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
DNA primase, catalytic core (EC:2.7.7.-)
DNA primase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL95_9FIRM
L1_008_000M1_scaffold_1459_21
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25934..26944)
DNA (1011bp) protein (337aa)
Putative dGTPase {ECO:0000313|EMBL:EFB76754.1}; EC=3.1.5.1 {ECO:0000313|EMBL:EFB76754.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
deoxyguanosinetriphosphate triphosphohydrolase, putative (EC:3.1.5.1)
Putative dGTPase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL96_9FIRM
L1_008_000M1_scaffold_1459_22
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27105..27725)
DNA (621bp) protein (207aa)
Putative YigZ family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL97_9FIRM
Putative YigZ family protein {ECO:0000313|EMBL:EFB76755.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_008_000M1_scaffold_1459_23
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(27813..28022)
DNA (210bp) protein (70aa)
50S ribosomal protein L31 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL98_9FIRM
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
LSU ribosomal protein L31P
L1_008_000M1_scaffold_1459_24
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28636..30330)
DNA (1695bp) protein (565aa)
Phosphomannomutase (EC:5.4.2.8)
Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMH5_9FIRM
Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II {ECO:0000313|EMBL:EFB75760.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_008_000M1_scaffold_1459_25
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30581..32104
DNA (1524bp) protein (508aa)
Mg chelatase-like protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMH6_9FIRM
Mg chelatase-like protein {ECO:0000313|EMBL:EFB75761.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Mg chelatase-related protein
L1_008_000M1_scaffold_1459_26
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32281..33099)
DNA (819bp) protein (273aa)
8-oxoguanine DNA-glycosylase (Ogg) {ECO:0000313|EMBL:EFQ05575.1}; EC=3.2.2.- {ECO:0000313|EMBL:EFQ05575.1};; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
8-oxoguanine DNA-glycosylase (Ogg) n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZMI4_9FIRM
putative N-glycosylase/DNA lyase
L1_008_000M1_scaffold_1459_27

Not on your lists

comp(33096..34157)
DNA (1062bp) protein (354aa)
Glycosyl transferase, group 1 family protein (Fragment) n=1 Tax=human gut metagenome RepID=K1T2U8_9ZZZZ
Glycosyl transferase, group 1 family protein {ECO:0000313|EMBL:EKC67252.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
group 1 glycosyl transferase
L1_008_000M1_scaffold_1459_28
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34186..35436)
DNA (1251bp) protein (417aa)
Beta-N-acetylhexosaminidase {ECO:0000256|SAAS:SAAS00114579}; EC=3.2.1.52 {ECO:0000256|SAAS:SAAS00114579};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Beta-glucosidase-related glycosidases (EC:3.2.1.52)
Glycosyl hydrolase family 3 N-terminal domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMH8_9FIRM
L1_008_000M1_scaffold_1459_29

Not on your lists

comp(35976..36998)
DNA (1023bp) protein (341aa)
Uncharacterized protein (Fragment) n=1 Tax=human gut metagenome RepID=K1TTG2_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC73063.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L1_008_000M1_scaffold_1459_30
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(37038..38522)
DNA (1485bp) protein (495aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMI0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75765.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC-type uncharacterized transport system.
Displaying items 1-30 of 36 in total

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