ggKbase home page

L1_008_000M1_scaffold_1578

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1578_1
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2..550
DNA (549bp) protein (183aa)
Resolvase N-terminal domain protein n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6QDT1_9FIRM
Resolvase N-terminal domain protein {ECO:0000313|EMBL:CDC31189.1}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
L1_008_000M1_scaffold_1578_2
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(901..1050)
DNA (150bp) protein (50aa)
Flavodoxin-like fold n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4JXT5_9FIRM
Flavodoxin-like fold.
Uncharacterized protein {ECO:0000313|EMBL:EHO32224.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
L1_008_000M1_scaffold_1578_3
Firmicutes bacterium CAG:791, Firmicutes, Bacteria

Not on your lists

1252..2211
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:791 RepID=R5CFY9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX66588.1}; TaxID=1262993 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:791.;"
hypothetical protein
L1_008_000M1_scaffold_1578_4

Not on your lists

2195..2953
DNA (759bp) protein (253aa)
Uncharacterized protein (Fragment) n=1 Tax=human gut metagenome RepID=K1RW84_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC45820.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L1_008_000M1_scaffold_1578_5
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3002..4387
DNA (1386bp) protein (462aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9ME40_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS69294.1}; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
hypothetical protein
L1_008_000M1_scaffold_1578_6
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4727..4945
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZFZ9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFQ07918.1}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
L1_008_000M1_scaffold_1578_7
Eubacterium sp. CAG:115, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5006..5320
DNA (315bp) protein (105aa)
Putative Cro/CI transcriptional regulator n=1 Tax=Eubacterium sp. CAG:115 RepID=R5LHT8_9FIRM
Putative Cro/CI transcriptional regulator {ECO:0000313|EMBL:CCY72716.1}; TaxID=1262878 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:115.;"
L1_008_000M1_scaffold_1578_8
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5466..5876
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LF31_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EET60770.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
hypothetical protein
L1_008_000M1_scaffold_1578_9

Not on your lists

5860..6057
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=human gut metagenome RepID=K1RVN2_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC45585.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_008_000M1_scaffold_1578_10
unknown

Not on your lists

6447..7100
DNA (654bp) protein (218aa)

This feature has no annotations

L1_008_000M1_scaffold_1578_11
[Clostridium] citroniae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7126..8244
DNA (1119bp) protein (373aa)
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HG36_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHE99680.1}; TaxID=742733 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] citroniae WAL-17108.;"
Coenzyme F420-reducing hydrogenase, beta subunit
L1_008_000M1_scaffold_1578_12
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8447..8707)
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SGZ9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDP20416.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
L1_008_000M1_scaffold_1578_13
Coprococcus eutactus, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8860..9747
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SQP9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDP27036.1}; TaxID=411474 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus eutactus ATCC 27759.;"
L1_008_000M1_scaffold_1578_14
Veillonella sp. DORA_B_18_19_23, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

9802..10647
DNA (846bp) protein (282aa)
UPI0003D603C0 related cluster n=1 Tax=unknown RepID=UPI0003D603C0
Uncharacterized protein {ECO:0000313|EMBL:ETI97428.1}; TaxID=1403933 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella sp. DORA_B_18_19_23.;"
L1_008_000M1_scaffold_1578_15
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10692..11012
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Clostridium sp. KLE 1755 RepID=U2CIZ8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI69192.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
hypothetical protein
L1_008_000M1_scaffold_1578_16
Enterococcus faecium, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11137..11307)
DNA (171bp) protein (57aa)
Predicted protein n=10 Tax=Enterococcus faecium RepID=C9BQ48_ENTFC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EJX98543.1}; TaxID=1134823 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecium ERV168.;"
L1_008_000M1_scaffold_1578_17
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11304..11747)
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S5Y6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDP23170.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
YolD-like protein.
L1_008_000M1_scaffold_1578_18
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11744..12649)
DNA (906bp) protein (302aa)
Uncharacterized protein n=1 Tax=Lactobacillus casei UW4 RepID=K6SGL8_LACCA
Uncharacterized protein {ECO:0000313|EMBL:EKQ24209.1}; TaxID=1051661 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei UW4.;"
hypothetical protein
L1_008_000M1_scaffold_1578_19
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12662..14134)
DNA (1473bp) protein (491aa)
ImpB/MucB/SamB family protein n=1 Tax=Clostridium sp. KLE 1755 RepID=U2CPG1_9CLOT
ImpB/MucB/SamB family protein {ECO:0000313|EMBL:ERI69186.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
Nucleotidyltransferase/DNA polymerase involved in DNA repair
L1_008_000M1_scaffold_1578_20
Lachnospiraceae bacterium 10-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14165..14389)
DNA (225bp) protein (75aa)
Uncharacterized protein n=2 Tax=unclassified Lachnospiraceae RepID=R9JL47_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS77689.1}; TaxID=1235800 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 10-1.;"
L1_008_000M1_scaffold_1578_21
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14404..14691)
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S5Y8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDP23172.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
hypothetical protein
L1_008_000M1_scaffold_1578_22
unknown

Not on your lists

comp(14721..15068)
DNA (348bp) protein (116aa)

This feature has no annotations

L1_008_000M1_scaffold_1578_23
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15102..16013)
DNA (912bp) protein (304aa)
Helix-turn-helix family protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IA72_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EWM54220.1}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
Predicted transcriptional regulator
L1_008_000M1_scaffold_1578_24
unknown

Not on your lists

16448..16795
DNA (348bp) protein (116aa)

This feature has no annotations

L1_008_000M1_scaffold_1578_25
unknown

Not on your lists

16789..17577
DNA (789bp) protein (263aa)

This feature has no annotations

L1_008_000M1_scaffold_1578_26
unknown

Not on your lists

17624..17914
DNA (291bp) protein (97aa)

This feature has no annotations

L1_008_000M1_scaffold_1578_27
unknown

Not on your lists

18131..18760
DNA (630bp) protein (210aa)

This feature has no annotations

L1_008_000M1_scaffold_1578_28
Paenibacillus lactis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19692..20162)
DNA (471bp) protein (157aa)
Helix-turn-helix domain protein n=1 Tax=Paenibacillus lactis 154 RepID=G4HLL9_9BACL
Helix-turn-helix domain protein {ECO:0000313|EMBL:EHB56945.1}; TaxID=743719 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus lactis 154.;"
transcriptional regulator
L1_008_000M1_scaffold_1578_29
[Clostridium] papyrosolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20508..20759
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Clostridium papyrosolvens C7 RepID=U4QY91_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EPR08127.1}; TaxID=1330534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] papyrosolvens C7.;"
DNA-binding protein
L1_008_000M1_scaffold_1578_30
RIFOXYB1_FULL_RIF_OD1_06_38_37_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

20752..21285
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCR5_9FIRM
hypothetical protein
Tax=RIFOXYB1_FULL_RIF_OD1_06_38_37_curated
Displaying items 1-30 of 36 in total

View Taxonomy