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L1_008_000M1_scaffold_2107

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Displaying items 1-30 of 89 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_2107_1
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..415
DNA (414bp) protein (138aa)
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
dTDP-glucose 4,6-dehydratase (EC:4.2.1.46)
dTDP-glucose 4,6-dehydratase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JGE4_9FIRM
L1_008_000M1_scaffold_2107_2
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

419..1267
DNA (849bp) protein (283aa)
dTDP-4-dehydrorhamnose reductase (EC:1.1.1.133)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CF32_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD76327.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
L1_008_000M1_scaffold_2107_3
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1324..3291)
DNA (1968bp) protein (656aa)
TRAP transporter, 4TM/12TM fusion protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JGE6_9FIRM
TRAP transporter, 4TM/12TM fusion protein {ECO:0000313|EMBL:EES75826.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
putative transporter
L1_008_000M1_scaffold_2107_4
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3297..4298)
DNA (1002bp) protein (334aa)
TAXI family TRAP transporter solute receptor n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JGE7_9FIRM
TAXI family TRAP transporter solute receptor {ECO:0000313|EMBL:EES75827.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
putative transporter
L1_008_000M1_scaffold_2107_5
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4450..5076
DNA (627bp) protein (209aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JGE9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES75829.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Cytidylate kinase
L1_008_000M1_scaffold_2107_6
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5183..5953)
DNA (771bp) protein (257aa)
UPF0271 protein BN806_01143 n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CE33_9FIRM
UPF0271 protein BN806_01143 {ECO:0000256|HAMAP-Rule:MF_00691}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Uncharacterized proteins, homologs of lactam utilization protein B
L1_008_000M1_scaffold_2107_7
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5977..7326)
DNA (1350bp) protein (450aa)
biotin carboxylase/acetyl-CoA carboxylase carboxyltransferase subunit alpha (EC:6.3.4.14 6.4.1.2)
Acetyl-CoA carboxylase, biotin carboxylase subunit n=2 Tax=Ruminococcus RepID=C6JGF1_9FIRM
Acetyl-CoA carboxylase, biotin carboxylase subunit {ECO:0000313|EMBL:EES75831.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L1_008_000M1_scaffold_2107_8
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7345..7782)
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CDQ6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD76319.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
acetyl-CoA carboxylase, biotin carboxyl carrier protein
L1_008_000M1_scaffold_2107_9
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7825..8832)
DNA (1008bp) protein (336aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JGF3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES75833.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
biotin-dependent carboxylase uncharacterized domain
L1_008_000M1_scaffold_2107_10
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8834..9559)
DNA (726bp) protein (242aa)
TIGR00370 family protein n=2 Tax=Ruminococcus RepID=C6JGF4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD76317.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
conserved hypothetical protein TIGR00370
L1_008_000M1_scaffold_2107_11
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9713..10915)
DNA (1203bp) protein (401aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JGF5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD76316.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Mn2+ and Fe2+ transporters of the NRAMP family
L1_008_000M1_scaffold_2107_12
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(11215..12609)
DNA (1395bp) protein (465aa)
Glycine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00006545}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00015978};; Glycyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00253}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
glycyl-tRNA synthetase, dimeric type (EC:6.1.1.14)
Glycine--tRNA ligase n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CHR6_9FIRM
L1_008_000M1_scaffold_2107_13
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12762..13514)
DNA (753bp) protein (251aa)
DNA repair protein RecO n=2 Tax=Ruminococcus RepID=C6JGF7_9FIRM
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
DNA replication and repair protein RecO
L1_008_000M1_scaffold_2107_14
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13543..14451)
DNA (909bp) protein (303aa)
GTPase Era n=2 Tax=Ruminococcus RepID=C6JGF8_9FIRM
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
GTP-binding protein Era
L1_008_000M1_scaffold_2107_15
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14468..17392)
DNA (2925bp) protein (975aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JGF9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77514.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Predicted Zn-dependent peptidases, insulinase-like
L1_008_000M1_scaffold_2107_16
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17426..18010)
DNA (585bp) protein (195aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JGG0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77513.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L1_008_000M1_scaffold_2107_17
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18143..19210)
DNA (1068bp) protein (356aa)
glf; UDP-galactopyranose mutase (EC:5.4.99.9)
UDP-galactopyranose mutase n=2 Tax=Ruminococcus RepID=C6JGG1_9FIRM
UDP-galactopyranose mutase {ECO:0000313|EMBL:CDD77512.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
L1_008_000M1_scaffold_2107_18
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19384..20919)
DNA (1536bp) protein (512aa)
Sodium/proline symporter n=2 Tax=Ruminococcus RepID=C6JGG2_9FIRM
Sodium/proline symporter {ECO:0000313|EMBL:EES75842.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
putP; sodium/proline symporter
L1_008_000M1_scaffold_2107_19
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21435..21989)
DNA (555bp) protein (185aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JGG3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES75843.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L1_008_000M1_scaffold_2107_20
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21967..23862)
DNA (1896bp) protein (632aa)
Type II secretory pathway, pullulanase PulA and related glycosidases (EC:3.2.1.-)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JGG4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77506.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
L1_008_000M1_scaffold_2107_21
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23926..24681)
DNA (756bp) protein (252aa)
exodeoxyribonuclease III (EC:3.1.11.2)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CH09_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77504.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
L1_008_000M1_scaffold_2107_22
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24900..25277
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JGG6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES75846.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Protein of unknown function (DUF1292).
L1_008_000M1_scaffold_2107_23
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25541..29764
DNA (4224bp) protein (1408aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JGG7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES75847.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L1_008_000M1_scaffold_2107_24
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29835..31019)
DNA (1185bp) protein (395aa)
Putative reductase RSAG_03035 {ECO:0000256|HAMAP-Rule:MF_01838}; EC=1.3.1.- {ECO:0000256|HAMAP-Rule:MF_01838};; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Uncharacterized paraquat-inducible protein B (EC:1.3.1.44)
Putative reductase RSAG_03035 n=2 Tax=Ruminococcus RepID=C6JGG8_9FIRM
L1_008_000M1_scaffold_2107_25
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31311..31823)
DNA (513bp) protein (171aa)
deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.6.1.23)
DUTP diphosphatase n=2 Tax=Ruminococcus RepID=C6JGG9_9FIRM
DUTP diphosphatase {ECO:0000313|EMBL:EES75849.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L1_008_000M1_scaffold_2107_26
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31959..32417)
DNA (459bp) protein (153aa)
Anaerobic ribonucleoside-triphosphate reductase-activating protein {ECO:0000256|PIRNR:PIRNR000368}; EC=1.97.1.- {ECO:0000256|PIRNR:PIRNR000368};; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
ribonucleoside-triphosphate reductase class III activase subunit (EC:1.97.1.4 1.17.4.2)
Anaerobic ribonucleoside-triphosphate reductase-activating protein n=2 Tax=Ruminococcus RepID=C6JGH0_9FIRM
L1_008_000M1_scaffold_2107_27
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32454..34553)
DNA (2100bp) protein (700aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
polyribonucleotide nucleotidyltransferase (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase n=2 Tax=Ruminococcus RepID=C6JGH1_9FIRM
L1_008_000M1_scaffold_2107_28
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(34881..35147)
DNA (267bp) protein (89aa)
30S ribosomal protein S15 n=2 Tax=Ruminococcus RepID=C6JGH2_9FIRM
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
SSU ribosomal protein S15P
L1_008_000M1_scaffold_2107_29
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35289..36185)
DNA (897bp) protein (299aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
riboflavin kinase/FMN adenylyltransferase (EC:2.7.1.26 2.7.7.2)
Riboflavin biosynthesis protein RibF n=2 Tax=Ruminococcus RepID=C6JGH3_9FIRM
L1_008_000M1_scaffold_2107_30
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36194..37078)
DNA (885bp) protein (295aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
tRNA pseudouridine synthase B (EC:4.2.1.70 5.4.99.12)
tRNA pseudouridine synthase B n=2 Tax=Ruminococcus RepID=C6JGH4_9FIRM
Displaying items 1-30 of 89 in total

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