ggKbase home page

L1_008_000M1_scaffold_27

Search features with annotation key words

Displaying items 1-30 of 207 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_27_1
unknown

Not on your lists

3..413
DNA (411bp) protein (137aa)

This feature has no annotations

L1_008_000M1_scaffold_27_2
unknown

Not on your lists

417..698
DNA (282bp) protein (94aa)

This feature has no annotations

L1_008_000M1_scaffold_27_3
unknown

Not on your lists

783..980
DNA (198bp) protein (66aa)

This feature has no annotations

L1_008_000M1_scaffold_27_4
Blautia hansenii, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1064..1528
DNA (465bp) protein (155aa)
Site-specific recombinase, phage integrase family n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L807_BLAHA
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:EEX21902.1}; TaxID=537007 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hansenii DSM 20583.;"
hypothetical protein
L1_008_000M1_scaffold_27_5
Lachnospiraceae bacterium 6_1_37FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1549..2253
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 6_1_37FAA RepID=E9RWT6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGC74306.1}; TaxID=658656 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_37FAA.;"
Site-specific recombinase XerD
L1_008_000M1_scaffold_27_6
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2621..3088
DNA (468bp) protein (156aa)
Ribosome maturation factor RimP n=4 Tax=Roseburia RepID=D4KQM8_9FIRM
hypothetical protein
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000M1_scaffold_27_7
Eubacterium sp. 14-2, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3124..4323
DNA (1200bp) protein (400aa)
Transcription termination factor NusA n=1 Tax=Eubacterium sp. 14-2 RepID=S0IXZ6_9FIRM
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1235790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 14-2.;"
transcription elongation factor NusA
L1_008_000M1_scaffold_27_8
Roseburia sp. CAG:182, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4313..4585
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:182 RepID=R7QYK2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF42763.1}; TaxID=1262942 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:182.;"
hypothetical protein
L1_008_000M1_scaffold_27_9
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4575..4895
DNA (321bp) protein (107aa)
Ribosomal protein L7Ae/L30e/S12e/Gadd45 n=1 Tax=Roseburia sp. CAG:45 RepID=R6NNK5_9FIRM
Ribosomal protein L7Ae/L30e/S12e/Gadd45 {ECO:0000313|EMBL:CDC12810.1}; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
Ribosomal protein HS6-type (S12/L30/L7a)
L1_008_000M1_scaffold_27_10
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4909..7500
DNA (2592bp) protein (864aa)
Translation initiation factor IF-2 n=1 Tax=Roseburia sp. CAG:197 RepID=R5YDM0_9FIRM
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
bacterial translation initiation factor 2 (bIF-2)
L1_008_000M1_scaffold_27_11
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7522..7884
DNA (363bp) protein (121aa)
Ribosome-binding factor A n=1 Tax=Roseburia sp. CAG:18 RepID=R5V4F2_9FIRM
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
ribosome-binding factor A
L1_008_000M1_scaffold_27_12
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7912..8877
DNA (966bp) protein (322aa)
Exopolyphosphatase-related proteins n=3 Tax=Roseburia intestinalis RepID=D4KWE0_9FIRM
Exopolyphosphatase-related proteins
Exopolyphosphatase-related proteins {ECO:0000313|EMBL:CBL11680.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000M1_scaffold_27_13
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8889..9791
DNA (903bp) protein (301aa)
tRNA pseudouridine synthase B (EC:4.2.1.70 5.4.99.12)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000313|EMBL:CBL09185.1}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
tRNA pseudouridine synthase B n=2 Tax=Roseburia intestinalis RepID=D4KQN3_9FIRM
L1_008_000M1_scaffold_27_14
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9805..10722
DNA (918bp) protein (306aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HM20_9FIRM
bifunctional riboflavin kinase/FMN adenylyltransferase
L1_008_000M1_scaffold_27_15
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10852..11925
DNA (1074bp) protein (358aa)
Cell wall-associated hydrolases (Invasion-associated proteins) n=1 Tax=Roseburia sp. CAG:45 RepID=R6P2T9_9FIRM
Cell wall-associated hydrolases (Invasion-associated proteins) {ECO:0000313|EMBL:CDC12796.1}; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
N-acetylmuramoyl-L-alanine amidase, C-terminus
L1_008_000M1_scaffold_27_16
unknown

Not on your lists

11940..12086
DNA (147bp) protein (49aa)

This feature has no annotations

L1_008_000M1_scaffold_27_17
Clostridium sp. CAG:411, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12192..12857
DNA (666bp) protein (222aa)
Methyl-accepting chemotaxis protein n=1 Tax=Clostridium sp. CAG:411 RepID=R7HX68_9CLOT
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:CDE44269.1}; TaxID=1262802 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:411.;"
methyl-accepting chemotaxis protein
L1_008_000M1_scaffold_27_18
unknown

Not on your lists

12842..12964
DNA (123bp) protein (41aa)

This feature has no annotations

L1_008_000M1_scaffold_27_19
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


13143..13409
DNA (267bp) protein (89aa)
30S ribosomal protein S15 n=1 Tax=Roseburia sp. CAG:197 RepID=R5YBR0_9FIRM
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
SSU ribosomal protein S15P
L1_008_000M1_scaffold_27_20
Eubacterium sp. 14-2, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13647..15740
DNA (2094bp) protein (698aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=1235790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 14-2.;"
Polyribonucleotide nucleotidyltransferase n=2 Tax=Eubacterium sp. 14-2 RepID=S0JH05_9FIRM
polynucleotide phosphorylase/polyadenylase
L1_008_000M1_scaffold_27_21
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15882..16772
DNA (891bp) protein (297aa)
Peptidase S8 and S53 subtilisin kexin sedolisin n=1 Tax=Roseburia sp. CAG:45 RepID=R6NCZ9_9FIRM
Peptidase S8 and S53 subtilisin kexin sedolisin {ECO:0000313|EMBL:CDC10023.1}; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
peptidase S8 and S53 subtilisin kexin sedolisin
L1_008_000M1_scaffold_27_22
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16833..18368
DNA (1536bp) protein (512aa)
Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes (EC:2.7.8.-)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HM16_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY30663.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
L1_008_000M1_scaffold_27_23
Catonella morbi, Catonella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18389..18901
DNA (513bp) protein (171aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=592026 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Catonella.;" source="Catonella morbi ATCC 51271.;"
Shikimate kinase n=1 Tax=Catonella morbi ATCC 51271 RepID=V2Z869_9FIRM
shikimate kinase
L1_008_000M1_scaffold_27_24
Lachnospiraceae bacterium A2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18873..20102)
DNA (1230bp) protein (410aa)
D-alanyl-D-alanine carboxypeptidase (Penicillin-binding protein 5/6) n=1 Tax=Lachnospiraceae bacterium A2 RepID=R9KEL6_9FIRM
D-alanyl-D-alanine carboxypeptidase (Penicillin-binding protein 5/6) {ECO:0000313|EMBL:EOS44905.1}; TaxID=397290 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A2.;"
Serine-type D-Ala-D-Ala carboxypeptidase
L1_008_000M1_scaffold_27_25
unknown

Not on your lists

20161..20283
DNA (123bp) protein (41aa)

This feature has no annotations

L1_008_000M1_scaffold_27_26
Roseburia sp. CAG:182, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20222..21076
DNA (855bp) protein (285aa)
Ser/Thr phosphatase family protein n=1 Tax=Roseburia sp. CAG:182 RepID=R7QZX9_9FIRM
Ser/Thr phosphatase family protein {ECO:0000313|EMBL:CDF42976.1}; TaxID=1262942 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:182.;"
metallophosphoesterase
L1_008_000M1_scaffold_27_27
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21152..21901
DNA (750bp) protein (250aa)
Segregation and condensation protein A n=1 Tax=Roseburia sp. CAG:45 RepID=R6NFW8_9FIRM
Segregation and condensation protein A {ECO:0000256|HAMAP-Rule:MF_01805, ECO:0000256|SAAS:SAAS00093938}; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
segregation and condensation protein A
L1_008_000M1_scaffold_27_28
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21920..22480
DNA (561bp) protein (187aa)
Segregation and condensation protein B n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2T324_ROSHA
segregation and condensation protein B
Segregation and condensation protein B {ECO:0000256|HAMAP-Rule:MF_01804, ECO:0000256|SAAS:SAAS00086417}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L1_008_000M1_scaffold_27_29
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22546..24390
DNA (1845bp) protein (615aa)
Pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Roseburia sp. CAG:50 RepID=R5TIH4_9FIRM
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:CCZ65465.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
L1_008_000M1_scaffold_27_30
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24384..26102
DNA (1719bp) protein (573aa)
hndD1; NADP-reducing hydrogenase subunit HndC (EC:1.12.1.3)
Putative ferredoxin hydrogenase HydA1 n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2RKT9_9FIRM
Putative ferredoxin hydrogenase HydA1 {ECO:0000313|EMBL:ERK51327.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
Displaying items 1-30 of 207 in total

View Taxonomy