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L1_008_000M1_scaffold_57

Search features with annotation key words

Displaying items 1-30 of 136 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_57_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(35..1600)
DNA (1566bp) protein (522aa)
GTPase HflX n=5 Tax=Bifidobacterium bifidum RepID=E3EMV1_BIFBS
GTP-binding protein
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L1_008_000M1_scaffold_57_2
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1795..2727)
DNA (933bp) protein (311aa)
Restriction endonuclease n=3 Tax=Bifidobacterium RepID=I3WGU8_BIFBI
restriction endonuclease
Uncharacterized protein {ECO:0000313|EMBL:CDB22928.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L1_008_000M1_scaffold_57_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2960..3613
DNA (654bp) protein (218aa)
16S RNA methylase (EC:2.1.1.171)
16S RNA methylase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P0L3_BIFBP
Methyltransferase small domain protein {ECO:0000313|EMBL:ERI84033.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ97733.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L1_008_000M1_scaffold_57_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3618..7706
DNA (4089bp) protein (1363aa)
ATP-dependent helicase HrpA n=2 Tax=Bifidobacterium bifidum RepID=U2DQZ1_BIFBI
ATP-dependent helicase HrpA {ECO:0000313|EMBL:ERI84032.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ97732.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hrpA; ATP-dependent helicase HrpA
L1_008_000M1_scaffold_57_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7788..8834
DNA (1047bp) protein (349aa)
hemagglutinin n=1 Tax=Bifidobacterium bifidum RepID=UPI0001976DBA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ERI84031.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L1_008_000M1_scaffold_57_6
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8797..9168)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6H9N1_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDB22932.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
hypothetical protein
L1_008_000M1_scaffold_57_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9349..10749
DNA (1401bp) protein (467aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=E4V8G2_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR49904.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
telomeric repeat-binding factor 2 domain
L1_008_000M1_scaffold_57_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10876..12213)
DNA (1338bp) protein (446aa)
glnA; glutamine synthetase, type I (EC:6.3.1.2)
Glutamine synthetase, type I {ECO:0000313|EMBL:AFL04106.1}; EC=6.3.1.2 {ECO:0000313|EMBL:AFL04106.1};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Glutamine synthetase type I, catalytic domain protein n=8 Tax=Bifidobacterium RepID=E3EMU4_BIFBS
L1_008_000M1_scaffold_57_9
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12320..13765
DNA (1446bp) protein (482aa)
Uncharacterized protein n=5 Tax=Bifidobacterium RepID=E4V8G0_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDB22935.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L1_008_000M1_scaffold_57_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13836..14561)
DNA (726bp) protein (242aa)
hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC:5.3.1.16)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase {ECO:0000256|HAMAP-Rule:MF_01014}; EC=5.3.1.16 {ECO:0000256|HAMAP-Rule:MF_01014};; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase {ECO:0000256|HAMAP-Rule:MF_01014}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P0K6_BIFBP
L1_008_000M1_scaffold_57_11
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14673..15323)
DNA (651bp) protein (217aa)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-Rule:MF_00278}; IGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; ImGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Imidazole glycerol phosphate synthase subunit HisH n=2 Tax=Bifidobacterium RepID=K2IS35_BIFBI
hisH; imidazole glycerol phosphate synthase, glutamineamido transferase subunit
L1_008_000M1_scaffold_57_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15389..16102)
DNA (714bp) protein (238aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=K2HBZ0_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKE51576.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L1_008_000M1_scaffold_57_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16102..16704)
DNA (603bp) protein (201aa)
Imidazoleglycerol-phosphate dehydratase {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599}; Short=IGPD {ECO:0000256|HAMAP-Rule:MF_00076};; EC=4.2.1.19 {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599};; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Imidazoleglycerol-phosphate dehydratase n=6 Tax=Bifidobacterium RepID=E3EMT9_BIFBS
hisB; imidazoleglycerol-phosphate dehydratase
L1_008_000M1_scaffold_57_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16842..18017)
DNA (1176bp) protein (392aa)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
hisC; histidinol-phosphate aminotransferase HisC (EC:2.6.1.9)
Histidinol-phosphate aminotransferase n=4 Tax=Bifidobacterium bifidum RepID=E4V8F5_BIFBI
L1_008_000M1_scaffold_57_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18162..19559)
DNA (1398bp) protein (466aa)
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
Histidinol dehydrogenase n=2 Tax=Bifidobacterium RepID=E4V8F4_BIFBI
hisD; histidinol dehydrogenase
L1_008_000M1_scaffold_57_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19747..20790
DNA (1044bp) protein (348aa)
Uncharacterized protein n=5 Tax=Bifidobacterium RepID=I3WGT4_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI42596.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L1_008_000M1_scaffold_57_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21088..21306)
DNA (219bp) protein (73aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=U2CIX7_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ERI84018.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L1_008_000M1_scaffold_57_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21287..21619)
DNA (333bp) protein (111aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=U2DQX6_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI84017.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L1_008_000M1_scaffold_57_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21780..22202)
DNA (423bp) protein (141aa)
Uncharacterized protein n=7 Tax=Bifidobacterium RepID=R6GNW8_9BIFI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI42593.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L1_008_000M1_scaffold_57_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22304..23212)
DNA (909bp) protein (303aa)
dkgA; 2,5-diketo-D-gluconic acid reductase A (EC:1.1.1.274)
2,5-diketo-D-gluconic acid reductase A n=2 Tax=Bifidobacterium bifidum RepID=I3WGT0_BIFBI
2,5-diketo-D-gluconic acid reductase A {ECO:0000313|EMBL:EKF16327.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L1_008_000M1_scaffold_57_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23518..24345
DNA (828bp) protein (276aa)
Aldo/keto reductase family {ECO:0000313|EMBL:KFI42591.1}; EC=1.1.1.188 {ECO:0000313|EMBL:KFI42591.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
2,5-didehydrogluconate reductase n=5 Tax=Bifidobacterium RepID=E3EMT1_BIFBS
2,5-didehydrogluconate reductase
L1_008_000M1_scaffold_57_22
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24485..25525
DNA (1041bp) protein (347aa)
Helix-turn-helix motif containing protein n=5 Tax=Bifidobacterium RepID=K2IS49_BIFBI
helix-turn-helix motif
Uncharacterized protein {ECO:0000313|EMBL:CDB22949.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L1_008_000M1_scaffold_57_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25632..25730
DNA (99bp) protein (33aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=I3WGS6_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ERI84012.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L1_008_000M1_scaffold_57_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25753..26055
DNA (303bp) protein (101aa)
Chromosomal replication initiator protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WGS5_BIFBI
dnaA; chromosomal replication initiator protein
Chromosomal replication initiator protein {ECO:0000313|EMBL:AFL04088.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L1_008_000M1_scaffold_57_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26108..27985)
DNA (1878bp) protein (626aa)
Myosin-cross-reactive antigen n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HVR2_BIFBI
putative 67 kDa myosin-crossreactivestreptococcal antigen
Putative 67 kDa myosin-crossreactivestreptococcal antigen {ECO:0000313|EMBL:AFL04087.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L1_008_000M1_scaffold_57_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28173..28478
DNA (306bp) protein (102aa)
Putative RNA-binding protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2I9L1_BIFBI
yqeI; putative RNA-binding protein
Putative RNA-binding protein {ECO:0000313|EMBL:EKE51589.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L1_008_000M1_scaffold_57_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28569..29411)
DNA (843bp) protein (281aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=K2M2T4_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKF16321.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
hypothetical protein
L1_008_000M1_scaffold_57_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29782..33351)
DNA (3570bp) protein (1190aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
DNA polymerase III subunit alpha n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HC12_BIFBI
dnaE; DNA polymerase III subunit alpha
L1_008_000M1_scaffold_57_29
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33599..34072
DNA (474bp) protein (158aa)
Uncharacterized protein n=3 Tax=Bifidobacterium RepID=R6GEY8_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDB22955.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
glycosyl hydrolase family protein
L1_008_000M1_scaffold_57_30
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

34015..34188
DNA (174bp) protein (58aa)
Beta-fructofuranosidase (Sucrase/invertase) possible inulinase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GNY0_9BIFI
Beta-fructofuranosidase (Sucrase/invertase) possible inulinase {ECO:0000313|EMBL:CDB22956.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
beta-fructofuranosidase
Displaying items 1-30 of 136 in total

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