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L1_008_000M1_scaffold_57

Search features with annotation key words

Displaying items 121-136 of 136 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_57_121
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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162209..162802
DNA (594bp) protein (198aa)
Uncharacterized protein n=3 Tax=Bifidobacterium RepID=E4V841_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:CDB23776.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
hypothetical protein
L1_008_000M1_scaffold_57_122
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

162817..163362
DNA (546bp) protein (182aa)
Uncharacterized protein n=3 Tax=Bifidobacterium bifidum RepID=E4V840_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKF16033.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L1_008_000M1_scaffold_57_123
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(163617..167648)
DNA (4032bp) protein (1344aa)
rpoC; DNA-directed RNA polymerase beta' chain RpoC (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
DNA-directed RNA polymerase subunit beta' n=5 Tax=Bifidobacterium bifidum RepID=E3ELV2_BIFBS
L1_008_000M1_scaffold_57_124
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(167761..171444)
DNA (3684bp) protein (1228aa)
rpoB; DNA-directed RNA polymerase subunit beta RpoB (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
DNA-directed RNA polymerase subunit beta n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NZV6_BIFBP
L1_008_000M1_scaffold_57_125
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(171593..172165)
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GDD7_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDB22380.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
hypothetical protein
L1_008_000M1_scaffold_57_126
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(172344..173309)
DNA (966bp) protein (322aa)
A/G-specific DNA glycosylase, HhH-GPD superfamily base excision DNA repair domain protein n=2 Tax=Bifidobacterium bifidum RepID=E3ELU9_BIFBS
mutY; A/G-specific DNA glycosylase
A/G-specific DNA glycosylase, HhH-GPD superfamily base excision DNA repair domain protein {ECO:0000313|EMBL:ADO52645.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L1_008_000M1_scaffold_57_127
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(173392..173856)
DNA (465bp) protein (155aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ELU8_BIFBS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO52644.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L1_008_000M1_scaffold_57_128
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(173901..174731)
DNA (831bp) protein (277aa)
F5/8 type C domain protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CDH0_BIFBI
F5/8 type C domain protein {ECO:0000313|EMBL:ERI82063.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ97613.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
coagulation factor 5/8 type domain
L1_008_000M1_scaffold_57_129
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

174816..175463
DNA (648bp) protein (216aa)
Putative tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
Putative tRNA (cytidine(34)-2'-O)-methyltransferase n=7 Tax=Bifidobacterium RepID=E4NZV3_BIFBP
RNA methyltransferase
L1_008_000M1_scaffold_57_130
unknown

Not on your lists

175938..176564
DNA (627bp) protein (209aa)

This feature has no annotations

L1_008_000M1_scaffold_57_131
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(176735..177199)
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2BV40_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:KFI42491.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
hypothetical protein
L1_008_000M1_scaffold_57_132
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(177846..179210)
DNA (1365bp) protein (455aa)
UPF0210 protein BN549_01377 n=2 Tax=Bifidobacterium RepID=R6H805_9BIFI
UPF0210 protein BIFI_0904 {ECO:0000256|HAMAP-Rule:MF_01221}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
hypothetical protein
L1_008_000M1_scaffold_57_133
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(179230..179502)
DNA (273bp) protein (91aa)
UPF0237 protein BBIF_0434 n=8 Tax=Bifidobacterium RepID=E3ELU3_BIFBS
hypothetical protein
UPF0237 protein BBIF_0434 {ECO:0000256|HAMAP-Rule:MF_01054}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L1_008_000M1_scaffold_57_134
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

179879..181204
DNA (1326bp) protein (442aa)
Transporter, major facilitator superfamily MFS1, alpha-ketoglutarate permease n=5 Tax=Bifidobacterium RepID=E3ELU2_BIFBS
kgtP; transporter major facilitator superfamily MFS1, alpha-ketoglutarate permease
Transporter, major facilitator family protein {ECO:0000313|EMBL:ERI82055.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L1_008_000M1_scaffold_57_135
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(181422..182672)
DNA (1251bp) protein (417aa)
galK; galactokinase GalK (EC:2.7.1.6)
Galactokinase n=8 Tax=Bifidobacterium RepID=E3ELU1_BIFBS
Galactokinase {ECO:0000256|SAAS:SAAS00025843}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L1_008_000M1_scaffold_57_136
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(182762..183835)
DNA (1074bp) protein (358aa)
galT; galactose-1-phosphate uridylyl transferase (EC:2.7.7.12)
Galactose-1-phosphate uridylyltransferase n=6 Tax=Bifidobacterium RepID=E3ELU0_BIFBS
Galactose-1-phosphate uridylyltransferase {ECO:0000313|EMBL:ADO52636.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Displaying items 121-136 of 136 in total

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