ggKbase home page

L1_008_000M1_scaffold_80

Search features with annotation key words

Displaying items 31-60 of 106 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_80_31
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

36576..42371
DNA (5796bp) protein (1932aa)
F5/8 type C domain protein n=3 Tax=Bifidobacterium bifidum RepID=U2BWS8_BIFBI
F5/8 type C domain protein {ECO:0000313|EMBL:ERI82664.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
multiple sugar recognition domains
L1_008_000M1_scaffold_80_32
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(42506..43519)
DNA (1014bp) protein (338aa)
Ribose-phosphate diphosphokinase {ECO:0000313|EMBL:EFR49633.1}; EC=2.7.6.1 {ECO:0000313|EMBL:EFR49633.1};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
Ribose-phosphate pyrophosphokinase n=7 Tax=Bifidobacterium RepID=E3ENJ9_BIFBS
prsA1; ribose-phosphate pyrophosphokinase
L1_008_000M1_scaffold_80_33
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(43710..46880)
DNA (3171bp) protein (1057aa)
Putative ATP synthase F0, A subunit n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V7P2_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:BAQ97479.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L1_008_000M1_scaffold_80_34
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(47061..47789)
DNA (729bp) protein (243aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V7P3_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR49635.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
hypothetical protein
L1_008_000M1_scaffold_80_35
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

47955..49238
DNA (1284bp) protein (428aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NZ23_BIFBP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDB22495.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L1_008_000M1_scaffold_80_36
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


49385..49681
DNA (297bp) protein (99aa)
30S ribosomal protein S6 n=8 Tax=Bifidobacterium RepID=E3ENK3_BIFBS
rpsF; 30S ribosomal protein S6
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L1_008_000M1_scaffold_80_37
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

49739..50422
DNA (684bp) protein (228aa)
Single-stranded DNA-binding protein n=5 Tax=Bifidobacterium bifidum RepID=E4NZ99_BIFBP
ssb; Ssb Single-strand DNA-binding protein
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L1_008_000M1_scaffold_80_38
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


50508..50756
DNA (249bp) protein (83aa)
30S ribosomal protein S18 n=7 Tax=Bifidobacterium RepID=E3ENK5_BIFBS
rpsR; 30S ribosomal protein S18
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L1_008_000M1_scaffold_80_39
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


50774..51220
DNA (447bp) protein (149aa)
50S ribosomal protein L9 n=5 Tax=Bifidobacterium RepID=E3ENK6_BIFBS
rplI; 50S ribosomal protein L9
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L1_008_000M1_scaffold_80_40
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

51814..52890
DNA (1077bp) protein (359aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=K2M2H2_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO52499.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L1_008_000M1_scaffold_80_41
Mixia osmundae, Mixia, Mixiales, Mixiomycetes, Basidiomycota, Fungi

Not on your lists

comp(52787..53485)
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Mixia osmundae (strain CBS 9802 / IAM 14324 / JCM 22182 / KY 12970) RepID=G7DVL5_MIXOS
Uncharacterized protein {ECO:0000313|EMBL:GAA94625.1}; TaxID=764103 species="Eukaryota; Fungi; Dikarya; Basidiomycota; Pucciniomycotina; Mixiomycetes; Mixiales; Mixiaceae; Mixia.;" source="Mixia osmundae (strain CBS 9802 / IAM 14324 / JCM 22182 / KY 12970).;"
LPXTG-motif cell wall anchor domain-containing protein
L1_008_000M1_scaffold_80_42
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

54288..55040
DNA (753bp) protein (251aa)
Channel protein, MIP family n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CF50_BIFBI
Channel protein, MIP family {ECO:0000313|EMBL:ERI82648.1}; Glycerol uptake facilitator protein {ECO:0000313|EMBL:BAQ97489.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
glpF; putative glycerol uptake facilitator protein
L1_008_000M1_scaffold_80_43
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

55241..56059
DNA (819bp) protein (273aa)
Uncharacterized protein n=3 Tax=Bifidobacterium bifidum RepID=U2DM83_BIFBI
hypothetical protein
Membrane protein {ECO:0000313|EMBL:KFI42380.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L1_008_000M1_scaffold_80_44
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

56092..57237
DNA (1146bp) protein (382aa)
tRNA ligase class I, catalytic domain protein n=2 Tax=Bifidobacterium RepID=U2DSD2_BIFBI
tRNA ligase class I, catalytic domain protein {ECO:0000313|EMBL:ERI82646.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
gluQ; glutamyl-Q tRNA(Asp) synthetase
L1_008_000M1_scaffold_80_45
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

57416..58240
DNA (825bp) protein (275aa)
Alanine racemase n=2 Tax=Bifidobacterium bifidum RepID=E3ENL2_BIFBS
hypothetical protein
Alanine racemase {ECO:0000313|EMBL:EKF16186.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L1_008_000M1_scaffold_80_46
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

58381..58761
DNA (381bp) protein (127aa)
acyP; acylphosphatase (EC:3.6.1.7)
Acylphosphatase {ECO:0000256|RuleBase:RU000553}; EC=3.6.1.7 {ECO:0000256|RuleBase:RU000553};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Acylphosphatase n=4 Tax=Bifidobacterium RepID=E3ENL3_BIFBS
L1_008_000M1_scaffold_80_47
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

59485..62955
DNA (3471bp) protein (1157aa)
Cell surface protein with gram positive anchor domain n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NZA8_BIFBP
cell surface protein
Cell surface protein with gram positive anchor domain {ECO:0000313|EMBL:KFI42384.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L1_008_000M1_scaffold_80_48
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

63117..64718
DNA (1602bp) protein (534aa)
Fimbrial subunit FimA n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NZA9_BIFBP
fimA; fimbrial subunit FimA
LPXTG-motif cell wall anchor domain protein {ECO:0000313|EMBL:EFR49651.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L1_008_000M1_scaffold_80_49
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

64899..66077
DNA (1179bp) protein (393aa)
Sortase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NZB0_BIFBP
sortase
Putative sortase {ECO:0000313|EMBL:AFL03863.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L1_008_000M1_scaffold_80_50
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

66353..67729
DNA (1377bp) protein (459aa)
protocadherin domain n=1 Tax=Bifidobacterium bifidum RepID=UPI0001976EAE
Uncharacterized protein {ECO:0000313|EMBL:EKE50138.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
protocadherin domain
L1_008_000M1_scaffold_80_51
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

67844..68659
DNA (816bp) protein (272aa)
Putative 2-hydroxyhepta-2, 4-diene-1, 7-dioateisomerase n=2 Tax=Bifidobacterium RepID=K2HUK1_BIFBI
Putative 2-hydroxyhepta-2, 4-diene-1, 7-dioateisomerase {ECO:0000313|EMBL:EKE50137.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
putative 2-hydroxyhepta-2,4-diene-1,7-dioateisomerase
L1_008_000M1_scaffold_80_52
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(68553..69200)
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DM72_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI82637.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L1_008_000M1_scaffold_80_53
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

69490..72153
DNA (2664bp) protein (888aa)
ClpB protein n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NZB3_BIFBP
clpB; ClpB protein
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L1_008_000M1_scaffold_80_54
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(72448..73221)
DNA (774bp) protein (258aa)
Small-conductance mechanosensitive channel n=5 Tax=Bifidobacterium RepID=I3WG54_BIFBI
mscS; Small-conductance mechanosensitive channel
Small-conductance mechanosensitive channel {ECO:0000313|EMBL:CDB22590.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L1_008_000M1_scaffold_80_55
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(73284..73934)
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CF36_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI82633.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
transcriptional regulator
L1_008_000M1_scaffold_80_56
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(74097..75371)
DNA (1275bp) protein (425aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DM68_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI82632.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
putative hydrolase or acyl transferase
L1_008_000M1_scaffold_80_57
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

75479..76669
DNA (1191bp) protein (397aa)
Aspartate aminotransferase {ECO:0000313|EMBL:EKF16377.1}; EC=2.6.1.1 {ECO:0000313|EMBL:EKF16377.1};; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
aminotransferase (EC:2.6.1.1)
Aspartate aminotransferase n=2 Tax=Bifidobacterium bifidum RepID=K2MGS4_BIFBI
L1_008_000M1_scaffold_80_58
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

76892..78040
DNA (1149bp) protein (383aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ENM5_BIFBS
Uncharacterized protein {ECO:0000313|EMBL:KFI42394.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
hypothetical protein
L1_008_000M1_scaffold_80_59
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

78107..79114
DNA (1008bp) protein (336aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ENM6_BIFBS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO52518.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L1_008_000M1_scaffold_80_60
unknown

Not on your lists

comp(79826..80392)
DNA (567bp) protein (189aa)

This feature has no annotations

Displaying items 31-60 of 106 in total

View Taxonomy