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L1_008_000M1_scaffold_80

Search features with annotation key words

Displaying items 1-30 of 106 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_80_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2..1288
DNA (1287bp) protein (429aa)
Lacto-N-biose phosphorylase 2 n=9 Tax=Bifidobacterium bifidum RepID=E3ELR6_BIFBS
lacto-N-biose phosphorylase
Lacto-N-biose phosphorylase 2 {ECO:0000313|EMBL:ADO52461.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L1_008_000M1_scaffold_80_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1513..1902
DNA (390bp) protein (130aa)
Psp Translation initiation inhibitor n=8 Tax=Bifidobacterium RepID=E4NYY9_BIFBP
endoribonuclease L-PSP
Putative endoribonuclease L-PSP {ECO:0000313|EMBL:ADO52462.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L1_008_000M1_scaffold_80_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2419..3498
DNA (1080bp) protein (360aa)
gde; glycerophosphodiester phosphodiesterase (EC:3.1.4.44)
Glycerophosphodiester phosphodiesterase n=2 Tax=Bifidobacterium bifidum RepID=I3WG01_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:BAQ97448.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L1_008_000M1_scaffold_80_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


3523..5364
DNA (1842bp) protein (614aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
argS; arginyl-tRNA synthetase (EC:6.1.1.19)
Arginine--tRNA ligase n=2 Tax=Bifidobacterium bifidum RepID=E4V7L5_BIFBI
L1_008_000M1_scaffold_80_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5531..7159
DNA (1629bp) protein (543aa)
lysA; diaminopimelate decarboxylase (EC:4.1.1.20)
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HAMAP-Rule:MF_02120};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Diaminopimelate decarboxylase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WG03_BIFBI
L1_008_000M1_scaffold_80_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7276..7782)
DNA (507bp) protein (169aa)
exp5; PTS system glucose-specific transporter subunit IICBA (EC:2.7.1.69)
PTS system, glucose-specific IIA component n=4 Tax=Bifidobacterium RepID=E3ELS1_BIFBS
PTS system, glucose-specific IIA component {ECO:0000313|EMBL:ADO52466.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L1_008_000M1_scaffold_80_7
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7779..9329)
DNA (1551bp) protein (517aa)
PTS system N-acetylglucosamine-specific transporter subunit IIBC (EC:2.7.1.69)
PTS system, N-acetylglucosamine-specific IIC subunit n=7 Tax=Bifidobacterium RepID=E3ELS2_BIFBS
PTS system protein {ECO:0000313|EMBL:CDB23064.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L1_008_000M1_scaffold_80_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9805..11118
DNA (1314bp) protein (438aa)
hom; Homoserine dehydrogenase (EC:1.1.1.3)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Homoserine dehydrogenase n=3 Tax=Bifidobacterium RepID=E3ELS3_BIFBS
L1_008_000M1_scaffold_80_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11266..12264
DNA (999bp) protein (333aa)
thrB; homoserine kinase (EC:2.7.1.39)
Homoserine kinase {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00129832}; Short=HK {ECO:0000256|HAMAP-Rule:MF_00384};; Short=HSK {ECO:0000256|HAMAP-Rule:MF_00384};; EC=2.7.1.39 {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00129832};; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Homoserine kinase n=3 Tax=Bifidobacterium bifidum RepID=E3ELS4_BIFBS
L1_008_000M1_scaffold_80_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12377..13813
DNA (1437bp) protein (479aa)
Maf-like/Nudix hydrolase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WG08_BIFBI
maf; Maf-like/Nudix hydrolase
Maf-like/Nudix hydrolase {ECO:0000313|EMBL:AFL03821.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L1_008_000M1_scaffold_80_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13817..14197)
DNA (381bp) protein (127aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NYZ8_BIFBP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKF14938.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L1_008_000M1_scaffold_80_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14197..14580)
DNA (384bp) protein (128aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=U2DS98_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ERI82616.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L1_008_000M1_scaffold_80_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14773..15810
DNA (1038bp) protein (346aa)
ABC transporter ATP-binding protein (EC:3.6.3.28)
ATP-binding protein of ABC transporter system n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NZ00_BIFBP
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFR49615.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L1_008_000M1_scaffold_80_14
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15807..17261
DNA (1455bp) protein (485aa)
Transporter n=8 Tax=Bifidobacterium RepID=E4NZ01_BIFBP
transporter
Transporter {ECO:0000313|EMBL:CDB23071.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L1_008_000M1_scaffold_80_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17336..18259)
DNA (924bp) protein (308aa)
Transporter n=6 Tax=Bifidobacterium RepID=E4NZ02_BIFBP
transporter
Transporter, auxin efflux carrier family protein {ECO:0000313|EMBL:ERI82613.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ97461.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L1_008_000M1_scaffold_80_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18521..19753
DNA (1233bp) protein (411aa)
DapE Succinyl-diaminopimelate desuccinylase {ECO:0000313|EMBL:KFI42355.1}; EC=3.5.1.18 {ECO:0000313|EMBL:KFI42355.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Succinyl-diaminopimelate desuccinylase n=5 Tax=Bifidobacterium RepID=U2DM43_BIFBI
peptidase
L1_008_000M1_scaffold_80_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19825..19986)
DNA (162bp) protein (54aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=R6GN43_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:ERI82611.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L1_008_000M1_scaffold_80_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20197..23115
DNA (2919bp) protein (973aa)
S1 RNA binding domain protein n=3 Tax=Bifidobacterium RepID=U2CDK0_BIFBI
S1 RNA binding domain protein {ECO:0000313|EMBL:ERI82610.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
rne; ribonuclease, Rne/Rng family
L1_008_000M1_scaffold_80_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


23282..23590
DNA (309bp) protein (103aa)
50S ribosomal protein L21 n=8 Tax=Bifidobacterium RepID=E3ELT3_BIFBS
rplU; 50S ribosomal protein L21
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L1_008_000M1_scaffold_80_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


23615..23866
DNA (252bp) protein (84aa)
50S ribosomal protein L27 n=8 Tax=Bifidobacterium RepID=E3ELT4_BIFBS
rpmA; 50S ribosomal protein L27
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L1_008_000M1_scaffold_80_21
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24314..25417)
DNA (1104bp) protein (368aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GN47_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDB23079.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
hypothetical protein
L1_008_000M1_scaffold_80_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25837..27522
DNA (1686bp) protein (562aa)
GTPase Obg n=2 Tax=Bifidobacterium bifidum RepID=E4NZ08_BIFBP
obgE; GTP-binding protein, GTP1/OBG family ObgE
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L1_008_000M1_scaffold_80_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27717..28847
DNA (1131bp) protein (377aa)
proB; glutamate 5-kinase ProB (EC:2.7.2.11)
Glutamate 5-kinase {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00057535}; EC=2.7.2.11 {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00186442};; Gamma-glutamyl kinase {ECO:0000256|HAMAP-Rule:MF_00456}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Glutamate 5-kinase n=5 Tax=Bifidobacterium RepID=E3ENJ0_BIFBS
L1_008_000M1_scaffold_80_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28920..30140
DNA (1221bp) protein (407aa)
aspC; aspartate aminotransferase (EC:2.6.1.1)
AspC Aspartate aminotransferase n=3 Tax=Bifidobacterium bifidum RepID=E4NZ10_BIFBP
Putative aspartate transaminase {ECO:0000313|EMBL:ERI82672.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L1_008_000M1_scaffold_80_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30429..30656
DNA (228bp) protein (76aa)
Protein translocase subunit SecE n=6 Tax=Bifidobacterium RepID=E3ENJ2_BIFBS
secE; preprotein translocase subunit SecE
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L1_008_000M1_scaffold_80_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30686..31528
DNA (843bp) protein (281aa)
Transcription termination/antitermination protein NusG n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2I9B6_BIFBI
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
nusG; transcription antitermination factor NusG
L1_008_000M1_scaffold_80_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31625..32518
DNA (894bp) protein (298aa)
Phospholipid/glycerol acyltransferase n=6 Tax=Bifidobacterium RepID=E3ENJ4_BIFBS
Acyltransferase {ECO:0000313|EMBL:EFR49628.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
phospholipid/glycerol acyltransferase
L1_008_000M1_scaffold_80_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32639..33634
DNA (996bp) protein (332aa)
gpsA; glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC:1.1.1.94)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00394}; EC=1.1.1.94 {ECO:0000256|HAMAP-Rule:MF_00394};; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00394}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
Glycerol-3-phosphate dehydrogenase [NAD(P)+] n=4 Tax=Bifidobacterium bifidum RepID=E3ENJ5_BIFBS
L1_008_000M1_scaffold_80_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33830..35014
DNA (1185bp) protein (395aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
D-alanine--D-alanine ligase n=2 Tax=Bifidobacterium bifidum RepID=E4V7N8_BIFBI
ddlA; D-alanine--D-alanine ligase
L1_008_000M1_scaffold_80_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

35044..36075
DNA (1032bp) protein (344aa)
Glycerophosphoryl diester phosphodiesterase n=3 Tax=Bifidobacterium bifidum RepID=E3ENJ7_BIFBS
glpQ; glycerophosphoryl diester phosphodiesterase GlpQ
GlpQ Glycerophosphoryl diester phosphodiesterase {ECO:0000313|EMBL:KFI42368.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Displaying items 1-30 of 106 in total

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