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L1_008_000M1_scaffold_117

Search features with annotation key words

Displaying items 31-60 of 99 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_117_31
unknown

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32091..32663
DNA (573bp) protein (191aa)

This feature has no annotations

L1_008_000M1_scaffold_117_32
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(33132..33533)
DNA (402bp) protein (134aa)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WSK5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX73322.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
hypothetical protein
L1_008_000M1_scaffold_117_33
Clostridium sp. CAG:590, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33852..35237
DNA (1386bp) protein (462aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:590 RepID=R5EMN6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX89311.1}; TaxID=1262825 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:590.;"
TrkA-N domain-containing protein
L1_008_000M1_scaffold_117_34
Lachnoanaerobaculum sp. MSX33, Lachnoanaerobaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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35242..36681
DNA (1440bp) protein (480aa)
Uncharacterized protein n=1 Tax=Clostridiales bacterium OBRC5-5 RepID=K0XNW2_9FIRM
Cation transport protein {ECO:0000313|EMBL:ETO99134.1}; TaxID=936596 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Lachnoanaerobaculum.;" source="Lachnoanaerobaculum sp. MSX33.;"
trkH2; Trk system potassium uptake protein TrkH
L1_008_000M1_scaffold_117_35
Firmicutes bacterium CAG:65, Firmicutes, Bacteria

Not on your lists

36737..36913
DNA (177bp) protein (59aa)
Uncharacterized protein n=2 Tax=Firmicutes RepID=R6EEI3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA98958.1}; TaxID=1262994 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:65.;"
hypothetical protein
L1_008_000M1_scaffold_117_36
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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37208..37918
DNA (711bp) protein (237aa)
Transcriptional regulator n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HVT9_9FIRM
Transcriptional regulator {ECO:0000313|EMBL:CCY33928.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
Transcriptional regulator
L1_008_000M1_scaffold_117_37
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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37946..39097
DNA (1152bp) protein (384aa)
Ig-like domain-containing surface protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N7A5_9FIRM
Ig-like domain-containing surface protein {ECO:0000313|EMBL:CCY97779.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
hypothetical protein
L1_008_000M1_scaffold_117_38
Tribolium castaneum, Tribolium, Coleoptera, Neoptera, Arthropoda, Metazoa

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39133..40122
DNA (990bp) protein (330aa)
PREDICTED: similar to proteophosphoglycan ppg4 n=1 Tax=Tribolium castaneum RepID=UPI000175869F
Putative uncharacterized protein {ECO:0000313|EMBL:EFA09013.1}; TaxID=7070 species="Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium.;" source="Tribolium castaneum (Red flour beetle).;"
infB; translation initiation factor IF-2
L1_008_000M1_scaffold_117_39
Clostridium sp. L2-50, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(40235..41152)
DNA (918bp) protein (306aa)
SufB/sufD domain protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VF59_9CLOT
SufB/sufD domain protein {ECO:0000313|EMBL:EDO57810.1}; TaxID=411489 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. L2-50.;"
ABC-type transport system involved in Fe-S cluster assembly, permease component
L1_008_000M1_scaffold_117_40
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(41168..41890)
DNA (723bp) protein (241aa)
Uncharacterized protein n=2 Tax=Roseburia RepID=R5HMJ4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY30960.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
ABC-type transport system involved in Fe-S cluster assembly, ATPase component
L1_008_000M1_scaffold_117_41
Lachnoanaerobaculum saburreum, Lachnoanaerobaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(41998..42477)
DNA (480bp) protein (160aa)
S-ribosylhomocysteine lyase {ECO:0000256|HAMAP-Rule:MF_00091, ECO:0000256|SAAS:SAAS00059609}; EC=4.4.1.21 {ECO:0000256|HAMAP-Rule:MF_00091, ECO:0000256|SAAS:SAAS00059628};; AI-2 synthesis protein {ECO:0000256|HAMAP-Rule:MF_00091}; Autoinducer-2 production protein LuxS {ECO:0000256|HAMAP-Rule:MF_00091}; TaxID=1095750 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Lachnoanaerobaculum.;" source="Lachnoanaerobaculum saburreum F0468.;"
S-ribosylhomocysteinase (EC:4.4.1.21)
S-ribosylhomocysteine lyase n=1 Tax=Lachnoanaerobaculum saburreum F0468 RepID=I0R7R3_9FIRM
L1_008_000M1_scaffold_117_42
Clostridium sp. CAG:590, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(42477..43169)
DNA (693bp) protein (231aa)
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase {ECO:0000256|SAAS:SAAS00035261}; EC=3.2.2.9 {ECO:0000256|SAAS:SAAS00035196};; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1 {ECO:0000256|SAAS:SAAS00035231}; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 {ECO:0000256|SAAS:SAAS00035188}; TaxID=1262825 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:590.;"
MTA/SAH nucleosidase (EC:3.2.2.9)
MTA/SAH nucleosidase n=1 Tax=Clostridium sp. CAG:590 RepID=R5E684_9CLOT
L1_008_000M1_scaffold_117_43
Coprococcus comes CAG:19, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(43242..44453)
DNA (1212bp) protein (404aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=1263070 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus comes CAG:19.;"
Nucleotidyltransferase/DNA polymerase involved in DNA repair (EC:2.7.7.7)
DNA polymerase IV n=2 Tax=Coprococcus RepID=R6LG43_9FIRM
L1_008_000M1_scaffold_117_44
Roseburia sp. CAG:182, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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44686..45843
DNA (1158bp) protein (386aa)
Nuclease SbcCD D subunit n=1 Tax=Roseburia sp. CAG:182 RepID=R7QY02_9FIRM
Nuclease SbcCD D subunit {ECO:0000313|EMBL:CDF42351.1}; TaxID=1262942 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:182.;"
nuclease SbcCD, D subunit
L1_008_000M1_scaffold_117_45
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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45840..48224
DNA (2385bp) protein (795aa)
Putative RecF/RecN/SMC N domain protein n=1 Tax=Clostridium sp. D5 RepID=F0YTC4_9CLOT
Putative RecF/RecN/SMC N domain protein {ECO:0000313|EMBL:EGB94144.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
ATPase involved in DNA repair
L1_008_000M1_scaffold_117_46
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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48742..49959
DNA (1218bp) protein (406aa)
Sodium/hydrogen exchanger n=1 Tax=Roseburia sp. CAG:45 RepID=R6NN26_9FIRM
sodium/hydrogen exchanger
Sodium/hydrogen exchanger {ECO:0000313|EMBL:CDC13603.1}; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
L1_008_000M1_scaffold_117_47
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(50379..50945)
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HMS4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY30953.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
Glycerol-3-phosphate responsive antiterminator (mRNA-binding)
L1_008_000M1_scaffold_117_48
unknown

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50982..51167
DNA (186bp) protein (62aa)

This feature has no annotations

L1_008_000M1_scaffold_117_49
Roseburia sp. CAG:182, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

51540..51944
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:182 RepID=R7QZC3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF42655.1}; TaxID=1262942 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:182.;"
hypothetical protein
L1_008_000M1_scaffold_117_50
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(52117..53721)
DNA (1605bp) protein (535aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
CTP synthase (EC:6.3.4.2)
CTP synthase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UMM5_9FIRM
L1_008_000M1_scaffold_117_51
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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53955..56024
DNA (2070bp) protein (690aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
ATP-dependent metalloprotease FtsH (EC:3.4.24.-)
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9J8W2_9FIRM
L1_008_000M1_scaffold_117_52
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

56017..57924
DNA (1908bp) protein (636aa)
UvrABC system protein C n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9J0M3_9FIRM
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
excinuclease ABC, C subunit
L1_008_000M1_scaffold_117_53
Roseburia sp. CAG:182, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

57992..58933
DNA (942bp) protein (314aa)
HPr kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058411}; Short=HPrK/P {ECO:0000256|HAMAP-Rule:MF_01249};; EC=2.7.11.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058427};; EC=2.7.4.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058435};; HPr(Ser) kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249}; TaxID=1262942 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:182.;"
Hpr(Ser) kinase/phosphatase (EC:2.7.1.- 2.7.11.- 2.7.4.-)
HPr kinase/phosphorylase n=1 Tax=Roseburia sp. CAG:182 RepID=R7R1K8_9FIRM
L1_008_000M1_scaffold_117_54
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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58965..60359
DNA (1395bp) protein (465aa)
M18 family aminopeptidase {ECO:0000256|RuleBase:RU004387}; EC=3.4.11.- {ECO:0000256|RuleBase:RU004387};; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
M18 family aminopeptidase n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2T1X4_ROSHA
putative aminopeptidase 1
L1_008_000M1_scaffold_117_55
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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60370..61287
DNA (918bp) protein (306aa)
UDP-N-acetylenolpyruvoylglucosamine reductase {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00041869}; EC=1.3.1.98 {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00057125};; UDP-N-acetylmuramate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00037}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
UDP-N-acetylmuramate dehydrogenase (EC:1.1.1.158)
UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BCR2_9FIRM
L1_008_000M1_scaffold_117_56
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

61284..62159
DNA (876bp) protein (292aa)
UPF0042 nucleotide-binding protein RHOM_02490 n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2T1X6_ROSHA
glmZ(sRNA)-inactivating NTPase
Nucleotide-binding protein RHOM_02490 {ECO:0000256|HAMAP-Rule:MF_00636}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L1_008_000M1_scaffold_117_57
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

62163..63029
DNA (867bp) protein (289aa)
Putative sporulation transcription regulator WhiA n=1 Tax=Clostridium sp. CAG:91 RepID=R6VVC2_9CLOT
Putative sporulation transcription regulator WhiA {ECO:0000256|HAMAP-Rule:MF_01420, ECO:0000256|SAAS:SAAS00005305}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
hypothetical protein
L1_008_000M1_scaffold_117_58
Roseburia sp. CAG:182, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

63038..63928
DNA (891bp) protein (297aa)
Putative lipid kinase n=1 Tax=Roseburia sp. CAG:182 RepID=R7QYZ6_9FIRM
Putative lipid kinase {ECO:0000313|EMBL:CDF43822.1}; TaxID=1262942 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:182.;"
putative lipid kinase
L1_008_000M1_scaffold_117_59
Lachnospiraceae bacterium A2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

64007..64873
DNA (867bp) protein (289aa)
fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist (EC:4.1.2.13)
Fructose-1,6-bisphosphate aldolase, class II n=1 Tax=Lachnospiraceae bacterium A2 RepID=R9K892_9FIRM
Fructose-1,6-bisphosphate aldolase, class II {ECO:0000313|EMBL:EOS42466.1}; TaxID=397290 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A2.;"
L1_008_000M1_scaffold_117_60
unknown

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65021..65194
DNA (174bp) protein (58aa)

This feature has no annotations

Displaying items 31-60 of 99 in total

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