ggKbase home page

L1_008_000M1_scaffold_120

Search features with annotation key words

Displaying items 61-90 of 100 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_120_61
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(65965..67533)
DNA (1569bp) protein (523aa)
pyridoxal-phosphate dependent TrpB-like enzyme (EC:4.2.1.20)
Tryptophan synthase {ECO:0000256|SAAS:SAAS00015859}; EC=4.2.1.20 {ECO:0000256|SAAS:SAAS00015859, ECO:0000313|EMBL:CBK97577.1};; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Pyridoxal-phosphate dependent TrpB-like enzyme n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JWV8_9FIRM
L1_008_000M1_scaffold_120_62
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

68289..69671
DNA (1383bp) protein (461aa)
Putative efflux protein MATE family n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6RYC5_9FIRM
Putative efflux protein MATE family {ECO:0000313|EMBL:CDC48016.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
putative efflux protein, MATE family
L1_008_000M1_scaffold_120_63
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(69726..70595)
DNA (870bp) protein (290aa)
EDD domain protein, DegV family n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JWV9_9FIRM
EDD domain protein, DegV family
EDD domain protein, DegV family {ECO:0000313|EMBL:CBK97578.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_120_64
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(70625..71131)
DNA (507bp) protein (169aa)
Predicted rRNA methylase (SpoU class) (EC:2.1.1.-)
Putative tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
Putative tRNA (cytidine(34)-2'-O)-methyltransferase n=2 Tax=Eubacterium RepID=D4MNQ1_9FIRM
L1_008_000M1_scaffold_120_65
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(71139..72350)
DNA (1212bp) protein (404aa)
Transglutaminase-like superfamily n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JWW1_9FIRM
Transglutaminase-like superfamily.
Transglutaminase-like superfamily {ECO:0000313|EMBL:CBK97580.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_120_66
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(72350..73192)
DNA (843bp) protein (281aa)
fumarase alpha subunit (EC:4.2.1.2)
Fumarase alpha subunit {ECO:0000313|EMBL:CBK97581.1}; EC=4.2.1.2 {ECO:0000313|EMBL:CBK97581.1};; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Fumarase alpha subunit n=2 Tax=root RepID=D4JWW2_9FIRM
L1_008_000M1_scaffold_120_67
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(73243..74415)
DNA (1173bp) protein (391aa)
Amidohydrolase family protein n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6RYD1_9FIRM
Amidohydrolase family protein {ECO:0000313|EMBL:CDC48026.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
Imidazolonepropionase and related amidohydrolases
L1_008_000M1_scaffold_120_68
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(74418..74942)
DNA (525bp) protein (175aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
Shikimate kinase (EC:2.7.1.71)
Shikimate kinase n=3 Tax=root RepID=B0MP74_9FIRM
L1_008_000M1_scaffold_120_69
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(74942..75787)
DNA (846bp) protein (282aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222};; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
Shikimate 5-dehydrogenase (EC:1.1.1.25)
Shikimate dehydrogenase n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6RJZ8_9FIRM
L1_008_000M1_scaffold_120_70
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(75790..76365)
DNA (576bp) protein (192aa)
Membrane-associated phospholipid phosphatase n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JWW6_9FIRM
Membrane-associated phospholipid phosphatase
Membrane-associated phospholipid phosphatase {ECO:0000313|EMBL:CBK97585.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_120_71
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(76365..77303)
DNA (939bp) protein (313aa)
malonyl CoA-acyl carrier protein transacylase (EC:2.3.1.39)
Malonyl CoA-acyl carrier protein transacylase {ECO:0000256|PIRNR:PIRNR000446, ECO:0000313|EMBL:CBK97586.1}; EC=2.3.1.39 {ECO:0000256|PIRNR:PIRNR000446, ECO:0000313|EMBL:CBK97586.1};; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Malonyl CoA-acyl carrier protein transacylase n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JWW7_9FIRM
L1_008_000M1_scaffold_120_72
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

77604..78602
DNA (999bp) protein (333aa)
3-oxoacyl-(acyl-carrier-protein) synthase III (EC:2.3.1.180)
3-oxoacyl-[acyl-carrier-protein] synthase 3 {ECO:0000256|HAMAP-Rule:MF_01815}; EC=2.3.1.180 {ECO:0000256|HAMAP-Rule:MF_01815, ECO:0000313|EMBL:CBL35376.1};; 3-oxoacyl-[acyl-carrier-protein] synthase III {ECO:0000256|HAMAP-Rule:MF_01815}; Beta-ketoacyl-ACP synthase III {ECO:0000256|HAMAP-Rule:MF_01815}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
3-oxoacyl-[acyl-carrier-protein] synthase 3 n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MNP3_9FIRM
L1_008_000M1_scaffold_120_73
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

78627..79553
DNA (927bp) protein (309aa)
putative enoyl-(acyl-carrier-protein) reductase II (EC:1.3.1.-)
Putative enoyl-(Acyl-carrier-protein) reductase II n=2 Tax=Eubacterium RepID=D4JWW9_9FIRM
Putative enoyl-(Acyl-carrier-protein) reductase II {ECO:0000313|EMBL:CDC48038.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L1_008_000M1_scaffold_120_74

Not on your lists

79599..80333
DNA (735bp) protein (245aa)
3-oxoacyl-(Acyl-carrier-protein) reductase {ECO:0000313|EMBL:EKC61541.1}; EC=1.1.1.100 {ECO:0000313|EMBL:EKC61541.1};; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
3-oxoacyl-[acyl-carrier-protein] reductase (EC:1.1.1.100)
3-oxoacyl-(Acyl-carrier-protein) reductase (Fragment) n=2 Tax=human gut metagenome RepID=K1TQH8_9ZZZZ
L1_008_000M1_scaffold_120_75
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

80362..81597
DNA (1236bp) protein (412aa)
3-oxoacyl-[acyl-carrier-protein] synthase II (EC:2.3.1.41 2.3.1.179)
3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447, ECO:0000313|EMBL:CBK97590.1};; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
3-oxoacyl-[acyl-carrier-protein] synthase 2 n=3 Tax=root RepID=D4JWX1_9FIRM
L1_008_000M1_scaffold_120_76
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

81616..82092
DNA (477bp) protein (159aa)
Biotin carboxyl carrier protein n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MNN9_9FIRM
biotin carboxyl carrier protein
Biotin carboxyl carrier protein {ECO:0000313|EMBL:CBL35372.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L1_008_000M1_scaffold_120_77
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

82106..82534
DNA (429bp) protein (143aa)
3-hydroxyacyl-[acyl-carrier-protein] dehydratase (EC:4.2.1.-)
3-hydroxyacyl-[acyl-carrier-protein] dehydratase {ECO:0000313|EMBL:CBL35371.1}; EC=4.2.1.- {ECO:0000313|EMBL:CBL35371.1};; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
3-hydroxyacyl-[acyl-carrier-protein] dehydratase n=3 Tax=Eubacterium RepID=D4JWX3_9FIRM
L1_008_000M1_scaffold_120_78
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

82553..83902
DNA (1350bp) protein (450aa)
acetyl-CoA carboxylase, biotin carboxylase (EC:6.4.1.2)
Acetyl-CoA carboxylase, biotin carboxylase subunit {ECO:0000313|EMBL:EDS00474.1}; EC=6.3.4.14 {ECO:0000313|EMBL:EDS00474.1};; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Acetyl-CoA carboxylase, biotin carboxylase n=2 Tax=Eubacterium siraeum RepID=D4MNN7_9FIRM
L1_008_000M1_scaffold_120_79
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

84165..85052
DNA (888bp) protein (296aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395}; Short=ACCase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395};; EC=6.4.1.2 {ECO:0000256|HAMAP-Rule:MF_01395};; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
acetyl-CoA carboxylase carboxyltransferase subunit alpha (EC:6.4.1.2)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6RK12_9FIRM
L1_008_000M1_scaffold_120_80
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

85063..85872
DNA (810bp) protein (270aa)
acetyl-CoA carboxylase carboxyltransferase subunit alpha (EC:6.4.1.2)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00176990}; Short=ACCase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; EC=6.4.1.2 {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00057486};; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JWX6_9FIRM
L1_008_000M1_scaffold_120_81
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

86565..86798
DNA (234bp) protein (78aa)
Acyl carrier protein n=5 Tax=root RepID=D4JWX7_9FIRM
acyl carrier protein
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L1_008_000M1_scaffold_120_82
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

86890..87372
DNA (483bp) protein (161aa)
hypothetical protein n=1 Tax=Eubacterium siraeum RepID=UPI0002FB2918
hypothetical protein
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CBL35366.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L1_008_000M1_scaffold_120_83
unknown

Not on your lists

87567..88238
DNA (672bp) protein (224aa)

This feature has no annotations

L1_008_000M1_scaffold_120_84
unknown

Not on your lists

88248..88613
DNA (366bp) protein (122aa)

This feature has no annotations

L1_008_000M1_scaffold_120_85
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(88715..89071)
DNA (357bp) protein (119aa)
Preprotein translocase, YajC subunit n=3 Tax=root RepID=D4JWX9_9FIRM
preprotein translocase, YajC subunit
Preprotein translocase, YajC subunit {ECO:0000313|EMBL:CBL35365.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L1_008_000M1_scaffold_120_86
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(89165..90445)
DNA (1281bp) protein (427aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JWY0_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK97599.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_120_87
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(90471..91067)
DNA (597bp) protein (199aa)
Predicted NADH:ubiquinone oxidoreductase, subunit RnfA n=3 Tax=Eubacterium siraeum RepID=D4JWY1_9FIRM
Predicted NADH:ubiquinone oxidoreductase, subunit RnfA
Predicted NADH:ubiquinone oxidoreductase, subunit RnfA {ECO:0000313|EMBL:CBL35363.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L1_008_000M1_scaffold_120_88
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(91060..91830)
DNA (771bp) protein (257aa)
Putative electron transport complex RsxE subunit n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MP92_9FIRM
Putative electron transport complex RsxE subunit {ECO:0000313|EMBL:EDS00482.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Predicted NADH:ubiquinone oxidoreductase, subunit RnfE
L1_008_000M1_scaffold_120_89
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(91784..93094)
DNA (1311bp) protein (437aa)
Predicted NADH:ubiquinone oxidoreductase, subunit RnfD n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JWY3_9FIRM
Predicted NADH:ubiquinone oxidoreductase, subunit RnfD
Predicted NADH:ubiquinone oxidoreductase, subunit RnfD {ECO:0000313|EMBL:CBK97602.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_120_90
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

93154..93729
DNA (576bp) protein (192aa)
Negative regulator of genetic competence (MecA) n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MNM7_9FIRM
Negative regulator of genetic competence (MecA).
Negative regulator of genetic competence (MecA) {ECO:0000313|EMBL:CBL35360.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
Displaying items 61-90 of 100 in total

View Taxonomy