ggKbase home page

L1_008_000M1_scaffold_248

Search features with annotation key words

Displaying items 31-60 of 238 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_248_31
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(40077..41066)
DNA (990bp) protein (330aa)
Protein-(Glutamine-N5) methyl transferase n=2 Tax=Bifidobacterium bifidum RepID=I3WJA6_BIFBI
hemK; protein-(glutamine-N5) methyl transferase
Protein-(Glutamine-N5) methyl transferase {ECO:0000313|EMBL:AFL04969.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L1_008_000M1_scaffold_248_32
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(41331..42419)
DNA (1089bp) protein (363aa)
Peptide chain release factor 1 n=8 Tax=Bifidobacterium RepID=E3EPD9_BIFBS
prfA; peptide chain release factor 1
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L1_008_000M1_scaffold_248_33
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(42565..42777)
DNA (213bp) protein (71aa)
50S ribosomal protein L31 n=8 Tax=Bifidobacterium RepID=E3EPE0_BIFBS
rpmE2; 50S ribosomal protein L31
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L1_008_000M1_scaffold_248_34
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

43092..44135
DNA (1044bp) protein (348aa)
Transcriptional regulator, AraC family n=3 Tax=Bifidobacterium bifidum RepID=U2BYR3_BIFBI
ykgD; putative HTH-type transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ERI83344.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ98599.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L1_008_000M1_scaffold_248_35
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

44435..45322
DNA (888bp) protein (296aa)
Glucose uptake protein n=6 Tax=Bifidobacterium bifidum RepID=E4NYB6_BIFBP
putative sugar uptake protein
Putative glucose uptake protein {ECO:0000313|EMBL:BAQ98600.1}; Putative glucose uptake protein GlcU {ECO:0000313|EMBL:ERI83343.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L1_008_000M1_scaffold_248_36
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

45390..46415
DNA (1026bp) protein (342aa)
iolG; inositol 2-dehydrogenase (EC:1.1.1.18)
Inositol 2-dehydrogenase {ECO:0000313|EMBL:AFL04974.1}; EC=1.1.1.18 {ECO:0000313|EMBL:AFL04974.1};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Inositol 2-dehydrogenase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WJB1_BIFBI
L1_008_000M1_scaffold_248_37
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(46436..47740)
DNA (1305bp) protein (435aa)
Cyclopropane-fatty-acyl-phospholipid synthase n=4 Tax=Bifidobacterium bifidum RepID=E4NYB8_BIFBP
putative methyl transferase
Putative methyl transferase {ECO:0000313|EMBL:AFL04975.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L1_008_000M1_scaffold_248_38
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(48007..48705)
DNA (699bp) protein (233aa)
Uncharacterized protein n=6 Tax=Bifidobacterium RepID=I3WJB3_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDB24737.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L1_008_000M1_scaffold_248_39
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

49763..50629
DNA (867bp) protein (289aa)
Aldose 1-epimerase family protein n=4 Tax=Bifidobacterium bifidum RepID=E4NYC0_BIFBP
aldose 1-epimerase
Aldose 1-epimerase {ECO:0000313|EMBL:ERI83337.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ98604.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L1_008_000M1_scaffold_248_40
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(50697..51809)
DNA (1113bp) protein (371aa)
Penicillin-binding protein n=2 Tax=Bifidobacterium bifidum RepID=I3WJB6_BIFBI
penicillin-binding protein
Penicillin-binding protein {ECO:0000313|EMBL:AFL04979.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L1_008_000M1_scaffold_248_41
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(51999..53993)
DNA (1995bp) protein (665aa)
ATP-dependent RNA helicase n=3 Tax=Bifidobacterium RepID=E4NYC2_BIFBP
ATP-dependent RNA helicase
RNA helicase {ECO:0000313|EMBL:BAQ98606.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L1_008_000M1_scaffold_248_42
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

54239..55153
DNA (915bp) protein (305aa)
Transporter, drug/metabolite exporter family n=9 Tax=Bifidobacterium RepID=E4NYC3_BIFBP
rhaT; Putative permease of the drug/metabolite transporter
Transporter, drug/metabolite exporter family {ECO:0000313|EMBL:KFI43735.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L1_008_000M1_scaffold_248_43
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(55367..55486)
DNA (120bp) protein (40aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=I3WJB9_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL04982.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L1_008_000M1_scaffold_248_44
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(55607..56431)
DNA (825bp) protein (275aa)
Putative ABC transporter, permease protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EQB1_BIFBS
ABC transporter permease
Putative ABC transporter, permease protein {ECO:0000313|EMBL:ADO53567.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L1_008_000M1_scaffold_248_45
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(56550..57413)
DNA (864bp) protein (288aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=E4VC19_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR51134.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
transporter
L1_008_000M1_scaffold_248_46
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(57462..57614)
DNA (153bp) protein (51aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EQB3_BIFBS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53569.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L1_008_000M1_scaffold_248_47
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(57611..58729)
DNA (1119bp) protein (373aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NYC6_BIFBP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDB21916.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L1_008_000M1_scaffold_248_48
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

58890..60167
DNA (1278bp) protein (426aa)
O-acetylhomoserine (thiol)-lyase (EC:2.5.1.49)
O-acetylhomoserine (Thiol)-lyase n=6 Tax=Bifidobacterium bifidum RepID=E3EQB5_BIFBS
O-acetylhomoserine aminocarboxypropyltransferase {ECO:0000313|EMBL:ERI83326.1}; Putative O-acetylhomoserine (Thiol)-lyase {ECO:0000313|EMBL:BAQ98614.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L1_008_000M1_scaffold_248_49
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(60272..60502)
DNA (231bp) protein (77aa)
Oxidoreductase n=2 Tax=Bifidobacterium bifidum RepID=K2IQ66_BIFBI
Oxidoreductase {ECO:0000313|EMBL:EKF14878.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
oxidoreductase
L1_008_000M1_scaffold_248_50
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(60513..60992)
DNA (480bp) protein (160aa)
Putative permease n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EQB7_BIFBS
permease
Putative permease {ECO:0000313|EMBL:ADO53573.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L1_008_000M1_scaffold_248_51
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

61369..62319
DNA (951bp) protein (317aa)
glkA; glucokinase (EC:2.7.1.2)
Glucokinase n=9 Tax=Bifidobacterium RepID=E3EQB8_BIFBS
Glk Glucokinase/Xylose repressor {ECO:0000313|EMBL:CDB21910.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L1_008_000M1_scaffold_248_52
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

63317..64909
DNA (1593bp) protein (531aa)
ABC transporter, ATP-binding protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2BYN8_BIFBI
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ERI83319.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ98618.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
expZ; nucleotide-binding protein
L1_008_000M1_scaffold_248_53
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(64895..65242)
DNA (348bp) protein (116aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=I3WJD0_BIFBI
hypothetical protein
Putative permease {ECO:0000313|EMBL:KFI43744.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L1_008_000M1_scaffold_248_54
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

65537..66379
DNA (843bp) protein (281aa)
xynB; endo-1,4-beta-xylanase B (EC:3.2.1.8)
Endo-1,4-beta-xylanase B {ECO:0000313|EMBL:AFL04994.1}; EC=3.2.1.8 {ECO:0000313|EMBL:AFL04994.1};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Endo-1,4-beta-xylanase B n=2 Tax=Bifidobacterium bifidum RepID=I3WJD1_BIFBI
L1_008_000M1_scaffold_248_55
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(66656..67279)
DNA (624bp) protein (208aa)
Nitroimidazole resistance protein n=2 Tax=Bifidobacterium bifidum RepID=I3WJD2_BIFBI
nitroimidazole resistance protein
Putative flavin-nucleotide-binding protein {ECO:0000313|EMBL:KFI43746.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L1_008_000M1_scaffold_248_56
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(67510..68010)
DNA (501bp) protein (167aa)
Uncharacterized protein n=3 Tax=Bifidobacterium bifidum RepID=I3WJD3_BIFBI
hypothetical protein
Membrane protein {ECO:0000313|EMBL:KFI43747.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L1_008_000M1_scaffold_248_57
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(68196..68420)
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HTV8_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKE50928.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L1_008_000M1_scaffold_248_58
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

68444..68578
DNA (135bp) protein (45aa)
Membrane protein n=3 Tax=Bifidobacterium bifidum RepID=I3WJD5_BIFBI
hypothetical protein
Membrane protein {ECO:0000313|EMBL:AFL04998.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L1_008_000M1_scaffold_248_59
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

68619..69266
DNA (648bp) protein (216aa)
pcp; pyroglutamyl-peptidase I (EC:3.4.19.3)
Pyrrolidone-carboxylate peptidase {ECO:0000256|HAMAP-Rule:MF_00417}; EC=3.4.19.3 {ECO:0000256|HAMAP-Rule:MF_00417};; 5-oxoprolyl-peptidase {ECO:0000256|HAMAP-Rule:MF_00417}; Pyroglutamyl-peptidase I {ECO:0000256|HAMAP-Rule:MF_00417}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Pyrrolidone-carboxylate peptidase n=2 Tax=Bifidobacterium bifidum RepID=I3WJD6_BIFBI
L1_008_000M1_scaffold_248_60
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(69354..69551)
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2M151_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKF15621.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
hypothetical protein
Displaying items 31-60 of 238 in total

View Taxonomy