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L1_008_000M1_scaffold_248

Search features with annotation key words

Displaying items 1-30 of 238 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_248_1
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..1773)
DNA (1773bp) protein (591aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02003}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Isoleucine--tRNA ligase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GBL8_9BIFI
ileS; isoleucyl-tRNA synthetase
L1_008_000M1_scaffold_248_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2314..2688)
DNA (375bp) protein (125aa)
Uncharacterized protein n=4 Tax=Bifidobacterium bifidum RepID=U2CFF7_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI83275.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L1_008_000M1_scaffold_248_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2945..4396
DNA (1452bp) protein (484aa)
aldH; aldehyde dehydrogenase (EC:1.2.1.5)
Aldehyde dehydrogenase n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EPA9_BIFBS
Aldehyde dehydrogenase {ECO:0000256|PIRNR:PIRNR036492}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L1_008_000M1_scaffold_248_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4654..5577)
DNA (924bp) protein (308aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NY85_BIFBP
hypothetical protein
Membrane protease-like protein {ECO:0000313|EMBL:ADO53527.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L1_008_000M1_scaffold_248_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5742..7037)
DNA (1296bp) protein (432aa)
cysD; O-acetylhomoserine (thiol)-lyase (EC:2.5.1.49)
Cysteine synthase n=2 Tax=Bifidobacterium bifidum RepID=E3EPB1_BIFBS
Cysteine synthase {ECO:0000313|EMBL:ADO53528.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L1_008_000M1_scaffold_248_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7182..8411)
DNA (1230bp) protein (410aa)
Putative cystathionine beta-lyase n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CFF3_BIFBI
Putative cystathionine beta-lyase {ECO:0000313|EMBL:ERI83270.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
metC; cystathionine beta-lyase
L1_008_000M1_scaffold_248_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8820..10208
DNA (1389bp) protein (463aa)
nox; NADH oxidase (EC:1.6.99.3)
Putative NADH oxidase n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2BYJ3_BIFBI
NADH oxidase {ECO:0000313|EMBL:BAQ98570.1}; Putative NADH oxidase {ECO:0000313|EMBL:ERI83269.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L1_008_000M1_scaffold_248_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10291..11535)
DNA (1245bp) protein (415aa)
GlxK Glycerate kinase {ECO:0000313|EMBL:KFI43700.1}; EC=2.7.1.31 {ECO:0000313|EMBL:KFI43700.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
glxK; glycerate kinase (EC:2.7.1.31)
Glycerate kinase n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CGW2_BIFBI
L1_008_000M1_scaffold_248_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11552..14470)
DNA (2919bp) protein (973aa)
ABC transporter ATP-binding protein (EC:3.6.3.31)
ABC transporter, ATP-binding protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4VC54_BIFBI
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFR51169.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L1_008_000M1_scaffold_248_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14615..17029
DNA (2415bp) protein (805aa)
Cation transporter, E1-E2 family ATPase n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EPB6_BIFBS
cation transporter E1-E2 family ATPase
Cation transporter, E1-E2 family ATPase {ECO:0000313|EMBL:ADO53533.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L1_008_000M1_scaffold_248_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17539..18546
DNA (1008bp) protein (336aa)
oxidoreductase (EC:1.1.1.65)
Oxidoreductase n=3 Tax=Bifidobacterium RepID=E3EPB9_BIFBS
Oxidoreductase {ECO:0000313|EMBL:ADO53536.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L1_008_000M1_scaffold_248_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18886..19428
DNA (543bp) protein (181aa)
polC; DNA polymerase III polC-type (EC:2.7.7.7)
DnaQ DNA polymerase III alpha subunit n=7 Tax=Bifidobacterium RepID=E4NY95_BIFBP
Exonuclease, DNA polymerase III, epsilon subunit family {ECO:0000313|EMBL:ERI83369.1}; Putative exonuclease {ECO:0000313|EMBL:BAQ98577.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L1_008_000M1_scaffold_248_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19526..20818)
DNA (1293bp) protein (431aa)
Citrate synthase n=5 Tax=Bifidobacterium RepID=E3EPC1_BIFBS
gltA; citrate synthase I
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L1_008_000M1_scaffold_248_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21029..21805)
DNA (777bp) protein (259aa)
map; map methionine aminopeptidase (EC:3.4.11.18)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Methionine aminopeptidase n=8 Tax=Bifidobacterium RepID=E3EPC2_BIFBS
L1_008_000M1_scaffold_248_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21830..22735)
DNA (906bp) protein (302aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WJ90_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL04953.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L1_008_000M1_scaffold_248_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22964..25045
DNA (2082bp) protein (694aa)
pepO; zinc metalloprotease PepO (EC:3.4.24.11)
PepO Zinc metalloprotease {ECO:0000313|EMBL:KFI43710.1}; EC=3.4.24.71 {ECO:0000313|EMBL:KFI43710.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
PepO Zinc metalloprotease n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NY99_BIFBP
L1_008_000M1_scaffold_248_17
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25094..25780)
DNA (687bp) protein (229aa)
Single-strand DNA binding protein n=6 Tax=Bifidobacterium RepID=E4NYA0_BIFBP
ssb; single-stranded DNA-binding protein
Single-strand DNA binding protein {ECO:0000313|EMBL:CDB24760.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L1_008_000M1_scaffold_248_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25990..26973
DNA (984bp) protein (328aa)
Uncharacterized protein n=5 Tax=Bifidobacterium bifidum RepID=I3WJ93_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI83361.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L1_008_000M1_scaffold_248_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(27129..28919)
DNA (1791bp) protein (597aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00011671}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00089874};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01569}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
proS; prolyl-tRNA synthetase (EC:6.1.1.15)
Proline--tRNA ligase n=6 Tax=Bifidobacterium bifidum RepID=E4NYA2_BIFBP
L1_008_000M1_scaffold_248_20
unknown

Not on your lists

comp(29085..29204)
DNA (120bp) protein (40aa)

This feature has no annotations

L1_008_000M1_scaffold_248_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29396..29824
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CH44_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI83358.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L1_008_000M1_scaffold_248_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29934..31346)
DNA (1413bp) protein (471aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4VC42_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR51157.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
helicase
L1_008_000M1_scaffold_248_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31418..32269)
DNA (852bp) protein (284aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EPD0_BIFBS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53547.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L1_008_000M1_scaffold_248_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32326..32976)
DNA (651bp) protein (217aa)
Oligoribonuclease {ECO:0000256|HAMAP-Rule:MF_00045}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00045};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Oligoribonuclease n=5 Tax=Bifidobacterium RepID=E4NYA5_BIFBP
orn; oligoribonuclease Orn
L1_008_000M1_scaffold_248_25
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33005..33739)
DNA (735bp) protein (245aa)
two-component response regulator (EC:2.7.13.3)
Two-component response regulator n=2 Tax=Bifidobacterium RepID=E4NYA6_BIFBP
Two-component response regulator {ECO:0000313|EMBL:CDB24768.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L1_008_000M1_scaffold_248_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

34045..35835
DNA (1791bp) protein (597aa)
Alpha-glucosidase {ECO:0000313|EMBL:AFL04964.1}; EC=3.2.1.93 {ECO:0000313|EMBL:AFL04964.1};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
aglA; alpha-glucosidase (EC:3.2.1.93)
Alpha-glucosidase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WJA1_BIFBI
L1_008_000M1_scaffold_248_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(35989..37509)
DNA (1521bp) protein (507aa)
guaB; inosine-5'-monophosphate dehydrogenase (EC:1.1.1.205)
Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928}; Short=IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPD {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPDH {ECO:0000256|HAMAP-Rule:MF_01964};; EC=1.1.1.205 {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Inosine-5'-monophosphate dehydrogenase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WJA2_BIFBI
L1_008_000M1_scaffold_248_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(37603..38784)
DNA (1182bp) protein (394aa)
Undecaprenyl-phosphate alpha-N-acetylglucosaminephosphotransferase n=2 Tax=Bifidobacterium bifidum RepID=E3EPD5_BIFBS
rfe; putative undecaprenyl-phosphatealpha-N-acetylglucosaminyl 1-phosphate transferase
Putative undecaprenyl-phosphatealpha-N-acetylglucosaminyl 1-phosphate transferase {ECO:0000313|EMBL:AFL04966.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L1_008_000M1_scaffold_248_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(38781..39440)
DNA (660bp) protein (220aa)
Sua5/YciO/YrdC/YwlC family protein n=8 Tax=Bifidobacterium RepID=E4NYB0_BIFBP
Sua5/YciO/YrdC/YwlC family protein
Translation factor {ECO:0000313|EMBL:AFL04967.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L1_008_000M1_scaffold_248_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

39730..40134
DNA (405bp) protein (135aa)
Maltose O-acetyl transferase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HA61_BIFBI
Maltose O-acetyl transferase {ECO:0000313|EMBL:EKE50901.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
acetyltransferase
Displaying items 1-30 of 238 in total

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