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L1_008_000M1_scaffold_248

Search features with annotation key words

Displaying items 151-180 of 238 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_248_151
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

194883..195641
DNA (759bp) protein (253aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=U2CDH1_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI82585.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L1_008_000M1_scaffold_248_152
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

196128..196613
DNA (486bp) protein (162aa)
Transposase n=5 Tax=Bifidobacterium bifidum RepID=E3ERA2_BIFBS
transposase
Uncharacterized protein {ECO:0000313|EMBL:ERI82584.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L1_008_000M1_scaffold_248_153
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

196570..196737
DNA (168bp) protein (56aa)
Transposase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GRS9_9BIFI
Transposase {ECO:0000313|EMBL:CDB24404.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
transposase-like protein
L1_008_000M1_scaffold_248_154
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(197249..198049)
DNA (801bp) protein (267aa)
Transglutaminase, N-terminal domain protein n=8 Tax=Bifidobacterium RepID=E4NZ29_BIFBP
putative cysteine protease
Transglutaminase, N-terminal domain protein {ECO:0000313|EMBL:KFI43846.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L1_008_000M1_scaffold_248_155
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(198171..200354)
DNA (2184bp) protein (728aa)
Uncharacterized protein n=3 Tax=Bifidobacterium bifidum RepID=I3WJN8_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:AFL05101.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
hypothetical protein
L1_008_000M1_scaffold_248_156
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(200540..201442)
DNA (903bp) protein (301aa)
truA; tRNA pseudouridine synthase A (EC:5.4.99.12)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
tRNA pseudouridine synthase A n=2 Tax=Bifidobacterium bifidum RepID=E4NZ31_BIFBP
L1_008_000M1_scaffold_248_157
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

201654..206537
DNA (4884bp) protein (1628aa)
NagZ Beta-N-acetylhexosaminidase {ECO:0000313|EMBL:KFI43849.1}; EC=3.2.1.52 {ECO:0000313|EMBL:KFI43849.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GSZ8_9BIFI
hypothetical protein
L1_008_000M1_scaffold_248_158
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(206936..207448)
DNA (513bp) protein (171aa)
50S ribosomal protein L17 n=4 Tax=Bifidobacterium RepID=E3ERA7_BIFBS
rplQ; 50S ribosomal protein L17
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L1_008_000M1_scaffold_248_159
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(207535..208530)
DNA (996bp) protein (332aa)
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
DNA-directed RNA polymerase subunit alpha n=8 Tax=Bifidobacterium RepID=E3ERA8_BIFBS
L1_008_000M1_scaffold_248_160
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(208611..209009)
DNA (399bp) protein (133aa)
30S ribosomal protein S11 n=7 Tax=Bifidobacterium RepID=E4NZ35_BIFBP
rpsK; 30S ribosomal protein S11
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L1_008_000M1_scaffold_248_161
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(209098..209475)
DNA (378bp) protein (126aa)
30S ribosomal protein S13 n=16 Tax=Bifidobacterium RepID=RS13_BIFAA
30S ribosomal protein S13
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
L1_008_000M1_scaffold_248_162
Bifidobacterium animalis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(209608..209721)
DNA (114bp) protein (38aa)
50S ribosomal protein L36 n=21 Tax=Bifidobacterium RepID=C6A6P0_BIFLB
rpmJ; 50S ribosomal protein L36
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; TaxID=552531 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium animalis subsp. lactis (strain BB-12).;"
L1_008_000M1_scaffold_248_163
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(209745..209963)
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=39 Tax=root RepID=IF1_BIFAA
infA; protein translation initiation factor 1 InfA
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L1_008_000M1_scaffold_248_164
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(210129..210692)
DNA (564bp) protein (188aa)
adk; adenylate kinase (EC:2.7.4.3)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
Adenylate kinase n=7 Tax=Bifidobacterium RepID=E3ERB3_BIFBS
L1_008_000M1_scaffold_248_165
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(210760..212094)
DNA (1335bp) protein (445aa)
Protein translocase subunit SecY n=5 Tax=Bifidobacterium bifidum RepID=E4NZ40_BIFBP
secY; pre protein translocase subunit
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L1_008_000M1_scaffold_248_166
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(212297..212752)
DNA (456bp) protein (152aa)
50S ribosomal protein L15 n=8 Tax=Bifidobacterium RepID=E3ERB5_BIFBS
rplO; 50S ribosomal protein L15
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L1_008_000M1_scaffold_248_167
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(212755..212937)
DNA (183bp) protein (61aa)
50S ribosomal protein L30 n=8 Tax=Bifidobacterium RepID=E3ERB6_BIFBS
rpmD; 50S ribosomal protein L30
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L1_008_000M1_scaffold_248_168
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(212937..213671)
DNA (735bp) protein (245aa)
30S ribosomal protein S5 n=8 Tax=Bifidobacterium RepID=E3ERB7_BIFBS
rpsE; 30S ribosomal protein S5
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L1_008_000M1_scaffold_248_169
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(213668..214039)
DNA (372bp) protein (124aa)
50S ribosomal protein L18 n=8 Tax=Bifidobacterium RepID=E3ERB8_BIFBS
rplR; 50S ribosomal protein L18
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L1_008_000M1_scaffold_248_170
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(214041..214580)
DNA (540bp) protein (180aa)
50S ribosomal protein L6 n=7 Tax=Bifidobacterium RepID=E3ERB9_BIFBS
rplF; 50S ribosomal protein L6
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L1_008_000M1_scaffold_248_171
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(214598..214996)
DNA (399bp) protein (133aa)
30S ribosomal protein S8 n=8 Tax=Bifidobacterium RepID=E3ERC0_BIFBS
rpsH; 30S ribosomal protein S8
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L1_008_000M1_scaffold_248_172
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(215086..215271)
DNA (186bp) protein (62aa)
30S ribosomal protein S14 type Z n=34 Tax=Bifidobacterium RepID=RS14Z_BIFLD
rpsN; 30S ribosomal protein S14
30S ribosomal protein S14 type Z {ECO:0000256|HAMAP-Rule:MF_01364, ECO:0000256|SAAS:SAAS00014984}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L1_008_000M1_scaffold_248_173
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(215273..215809)
DNA (537bp) protein (179aa)
50S ribosomal protein L5 n=8 Tax=Bifidobacterium RepID=E3ERC2_BIFBS
rplE; 50S ribosomal protein L5
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L1_008_000M1_scaffold_248_174
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(215806..216141)
DNA (336bp) protein (112aa)
50S ribosomal protein L24 n=8 Tax=Bifidobacterium RepID=E3ERC3_BIFBS
rplX; 50S ribosomal protein L24
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L1_008_000M1_scaffold_248_175
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(216143..216511)
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=7 Tax=Bifidobacterium RepID=E3ERC4_BIFBS
rplN; 50S ribosomal protein L14
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L1_008_000M1_scaffold_248_176
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(216604..216870)
DNA (267bp) protein (89aa)
30S ribosomal protein S17 n=7 Tax=Bifidobacterium RepID=E3ERC5_BIFBS
rpsQ; 30S ribosomal protein S17
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L1_008_000M1_scaffold_248_177
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(216873..217130)
DNA (258bp) protein (86aa)
50S ribosomal protein L29 n=8 Tax=Bifidobacterium RepID=E3ERC6_BIFBS
rpmC; 50S ribosomal protein L29
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L1_008_000M1_scaffold_248_178
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(217130..217549)
DNA (420bp) protein (140aa)
50S ribosomal protein L16 n=8 Tax=Bifidobacterium RepID=E3ERC7_BIFBS
rplP; 50S ribosomal protein L16
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L1_008_000M1_scaffold_248_179
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(217554..218372)
DNA (819bp) protein (273aa)
30S ribosomal protein S3 n=8 Tax=Bifidobacterium RepID=E3ERC8_BIFBS
rpsC; 30S ribosomal protein S3
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L1_008_000M1_scaffold_248_180
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(218374..218733)
DNA (360bp) protein (120aa)
50S ribosomal protein L22 n=7 Tax=Bifidobacterium RepID=E3ERC9_BIFBS
rplV; 50S ribosomal protein L22
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Displaying items 151-180 of 238 in total

View Taxonomy