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L1_008_000M1_scaffold_531

Search features with annotation key words

Displaying items 1-30 of 83 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_531_1
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(63..968)
DNA (906bp) protein (302aa)
homoserine O-succinyltransferase (EC:2.3.1.46)
Homoserine O-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084556}; EC=2.3.1.46 {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084596};; Homoserine O-transsuccinylase {ECO:0000256|HAMAP-Rule:MF_00295}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Homoserine O-succinyltransferase n=2 Tax=Roseburia intestinalis RepID=D4KRH6_9FIRM
L1_008_000M1_scaffold_531_2
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1009..3003)
DNA (1995bp) protein (665aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
DNA ligase n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HRH4_9FIRM
DNA ligase
L1_008_000M1_scaffold_531_3
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3005..3727)
DNA (723bp) protein (241aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
Pseudouridine synthase n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HLY4_9FIRM
pseudouridylate synthase
L1_008_000M1_scaffold_531_4
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3774..5225)
DNA (1452bp) protein (484aa)
Bacterial SH3 domain n=1 Tax=Roseburia sp. CAG:197 RepID=R5YGL4_9FIRM
Bacterial SH3 domain {ECO:0000313|EMBL:CDA26000.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
Bacterial SH3 domain.
L1_008_000M1_scaffold_531_5
Lachnospiraceae bacterium 28-4, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5481..7322)
DNA (1842bp) protein (614aa)
ATP-binding cassette, subfamily B, bacterial n=1 Tax=Lachnospiraceae bacterium 28-4 RepID=R9JD98_9FIRM
ATP-binding cassette, subfamily B, bacterial {ECO:0000313|EMBL:EOS32098.1}; TaxID=397287 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 28-4.;"
putative ABC transporter
L1_008_000M1_scaffold_531_6
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7322..9472)
DNA (2151bp) protein (717aa)
ABC transporter, ATP-binding protein n=1 Tax=Clostridium sp. KLE 1755 RepID=U2AX65_9CLOT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ERI70444.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
hypothetical protein
L1_008_000M1_scaffold_531_7
Blautia sp. CAG:37, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9456..9947)
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Blautia sp. CAG:37 RepID=R7JUV1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE67745.1}; TaxID=1262757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:37.;"
transcriptional regulator
L1_008_000M1_scaffold_531_8
Eubacterium limosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10046..10891)
DNA (846bp) protein (282aa)
NTP pyrophosphohydrolases containing a Zn-finger n=1 Tax=Eubacterium limosum (strain KIST612) RepID=E3GJR6_EUBLK
NTP pyrophosphohydrolases containing a Zn-finger
NTP pyrophosphohydrolases containing a Zn-finger {ECO:0000313|EMBL:ADO35974.1}; TaxID=903814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium limosum (strain KIST612).;"
L1_008_000M1_scaffold_531_9
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10888..11430)
DNA (543bp) protein (181aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Shikimate kinase (EC:2.7.1.71)
Shikimate kinase n=1 Tax=Roseburia sp. CAG:50 RepID=R5U7B6_9FIRM
L1_008_000M1_scaffold_531_10
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11444..12208)
DNA (765bp) protein (255aa)
aroD; 3-dehydroquinate dehydratase (EC:4.2.1.10)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00214}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00214};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00214};; Type I DHQase {ECO:0000256|HAMAP-Rule:MF_00214}; Type I dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00214}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
3-dehydroquinate dehydratase n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2SWX9_ROSHA
L1_008_000M1_scaffold_531_11
Lachnospiraceae bacterium A2, Clostridiales, Clostridia, Firmicutes, Bacteria

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12964..13851
DNA (888bp) protein (296aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=397290 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A2.;"
Shikimate dehydrogenase n=1 Tax=Lachnospiraceae bacterium A2 RepID=R9KI90_9FIRM
hypothetical protein
L1_008_000M1_scaffold_531_12
Roseburia sp. CAG:182, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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13848..14882
DNA (1035bp) protein (345aa)
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; EC=2.5.1.54 {ECO:0000256|PIRNR:PIRNR001361};; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase {ECO:0000256|PIRNR:PIRNR001361}; DAHP synthase {ECO:0000256|PIRNR:PIRNR001361}; Phospho-2-keto-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; TaxID=1262942 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:182.;"
Phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Roseburia sp. CAG:182 RepID=R7QVH2_9FIRM
phospho-2-dehydro-3-deoxyheptonate aldolase
L1_008_000M1_scaffold_531_13
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14954..15838)
DNA (885bp) protein (295aa)
Tyrosine recombinase XerC n=4 Tax=Roseburia RepID=D4KRI8_9FIRM
tyrosine recombinase XerD subunit
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000M1_scaffold_531_14
Roseburia sp. CAG:182, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16026..16631)
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:182 RepID=R7QW29_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF41666.1}; TaxID=1262942 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:182.;"
L1_008_000M1_scaffold_531_15
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16694..17239)
DNA (546bp) protein (182aa)
NTP pyrophosphohydrolases including oxidative damage repair enzymes (EC:3.6.1.13)
Hydrolase, NUDIX family n=2 Tax=Roseburia RepID=C0FR61_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY30160.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
L1_008_000M1_scaffold_531_16
Roseburia sp. CAG:182, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17325..18872)
DNA (1548bp) protein (516aa)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; TaxID=1262942 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:182.;"
Ribonuclease Y n=1 Tax=Roseburia sp. CAG:182 RepID=R7QU37_9FIRM
metal dependent phosphohydrolase
L1_008_000M1_scaffold_531_17
Roseburia sp. CAG:182, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18973..19578)
DNA (606bp) protein (202aa)
Regulatory protein RecX n=1 Tax=Roseburia sp. CAG:182 RepID=R7QVG8_9FIRM
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=1262942 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:182.;"
hypothetical protein
L1_008_000M1_scaffold_531_18
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19581..20678)
DNA (1098bp) protein (366aa)
Protein RecA n=4 Tax=Roseburia RepID=D4KRJ4_9FIRM
protein RecA
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L1_008_000M1_scaffold_531_19
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20911..21237)
DNA (327bp) protein (109aa)
Thioredoxin n=1 Tax=Roseburia sp. CAG:45 RepID=R6PVW9_9FIRM
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
thioredoxin
L1_008_000M1_scaffold_531_20
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21250..22839)
DNA (1590bp) protein (530aa)
Peptide chain release factor 3 n=2 Tax=Roseburia RepID=R6B7W3_9FIRM
Peptide chain release factor 3 {ECO:0000256|HAMAP-Rule:MF_00072, ECO:0000256|SAAS:SAAS00089051}; Short=RF-3 {ECO:0000256|HAMAP-Rule:MF_00072};; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
peptide chain release factor 3
L1_008_000M1_scaffold_531_21
Eubacterium sp. 14-2, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22988..23545)
DNA (558bp) protein (186aa)
Elongation factor P n=1 Tax=Eubacterium sp. 14-2 RepID=S0IWG1_9FIRM
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=1235790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 14-2.;"
translation elongation factor P (EF-P)
L1_008_000M1_scaffold_531_22
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23650..24090)
DNA (441bp) protein (147aa)
ribose-5-phosphate isomerase (EC:5.3.1.6)
Ribose-5-phosphate isomerase B n=2 Tax=Clostridiales RepID=U2QUK7_9FIRM
Ribose 5-phosphate isomerase B {ECO:0000313|EMBL:CCZ63886.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
L1_008_000M1_scaffold_531_23
Roseburia sp. CAG:182, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24107..24583)
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:182 RepID=R7QW09_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF41863.1}; TaxID=1262942 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:182.;"
hypothetical protein
L1_008_000M1_scaffold_531_24
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24615..25151)
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:45 RepID=R6NIW9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC11125.1}; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
nicotinamidase-like amidase
L1_008_000M1_scaffold_531_25
Clostridium sp. CAG:253, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25286..26296)
DNA (1011bp) protein (337aa)
Phosphotransacetylase n=1 Tax=Clostridium sp. CAG:253 RepID=R6MWC5_9CLOT
Phosphotransacetylase {ECO:0000313|EMBL:CDB90172.1}; TaxID=1262785 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:253.;"
phosphate acetyltransferase
L1_008_000M1_scaffold_531_26
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26516..26893)
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HXI0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY29467.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
hypothetical protein
L1_008_000M1_scaffold_531_27
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(26981..27505)
DNA (525bp) protein (175aa)
Transcriptional repressor NrdR n=4 Tax=Roseburia RepID=D4KS63_9FIRM
transcriptional regulator NrdR
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000M1_scaffold_531_28
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(27523..27777)
DNA (255bp) protein (85aa)
Sporulation protein, YlmC/YmxH family n=2 Tax=Roseburia intestinalis RepID=D4KS64_9FIRM
sporulation protein, YlmC/YmxH family
Sporulation protein, YlmC/YmxH family {ECO:0000313|EMBL:CBL14163.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000M1_scaffold_531_29
Eubacterium sp. 14-2, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(27852..28952)
DNA (1101bp) protein (367aa)
Ribosome-binding ATPase YchF n=1 Tax=Eubacterium sp. 14-2 RepID=S0IUP7_9FIRM
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=1235790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 14-2.;"
putative GTPase
L1_008_000M1_scaffold_531_30
unknown

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comp(29170..29328)
DNA (159bp) protein (53aa)

This feature has no annotations

Displaying items 1-30 of 83 in total

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