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L1_008_000M1_scaffold_470

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_470_1
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

comp(141..362)
DNA (222bp) protein (74aa)
ribose-5-phosphate isomerase B (EC:5.3.1.6)
Sugar-phosphate isomerase RpiB/LacA/LacB family n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LP12_9FIRM
Sugar-phosphate isomerase RpiB/LacA/LacB family {ECO:0000313|EMBL:CDB87585.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
L1_008_000M1_scaffold_470_2
Clostridium sp. CAG:448, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(359..1786)
DNA (1428bp) protein (476aa)
Alpha-L-rhamnosidase n=1 Tax=Clostridium sp. CAG:448 RepID=R6T4N3_9CLOT
Alpha-L-rhamnosidase {ECO:0000313|EMBL:CDC62756.1}; TaxID=1262808 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:448.;"
alpha-L-rhamnosidase
L1_008_000M1_scaffold_470_3
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2047..2379)
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:180 RepID=R5MH71_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY90848.1}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
Branched-chain amino acid transport protein (AzlD).
L1_008_000M1_scaffold_470_4
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2376..3086)
DNA (711bp) protein (237aa)
AzlC protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VVD7_9CLOT
AzlC protein {ECO:0000313|EMBL:EDO60937.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
branched-chain amino acid transporter
L1_008_000M1_scaffold_470_5
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3202..4275)
DNA (1074bp) protein (358aa)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase n=1 Tax=Clostridium sp. MSTE9 RepID=J1H628_9CLOT
L1_008_000M1_scaffold_470_6
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4291..5994)
DNA (1704bp) protein (568aa)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_00572}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
2-isopropylmalate synthase, yeast type (EC:2.3.3.13)
2-isopropylmalate synthase n=1 Tax=Clostridium sp. MSTE9 RepID=J1H605_9CLOT
L1_008_000M1_scaffold_470_7
Eubacterium sp. CAG:786, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6482..6826)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:786 RepID=R5GKK5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY17945.1}; TaxID=1262893 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:786.;"
macrophage migration inhibitory factor family protein
L1_008_000M1_scaffold_470_8
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6952..8682)
DNA (1731bp) protein (577aa)
B12 binding domain protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EEY6_9CLOT
B12 binding domain protein {ECO:0000313|EMBL:EEG29958.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
cobalamin B12-binding domain-containing protein
L1_008_000M1_scaffold_470_9
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8813..9262)
DNA (450bp) protein (150aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI00037D8FE1
Uncharacterized protein {ECO:0000313|EMBL:EJF41688.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
L1_008_000M1_scaffold_470_10
Paenibacillus borealis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

10002..10634
DNA (633bp) protein (211aa)
Uncharacterized protein n=1 Tax=Clostridium perfringens NCTC 8239 RepID=B1RMF4_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIQ56954.1}; TaxID=160799 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus borealis.;"
L1_008_000M1_scaffold_470_11
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10737..11273
DNA (537bp) protein (179aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNI0_9FIRM
Transcriptional regulator {ECO:0000313|EMBL:KJF40932.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
hypothetical protein
L1_008_000M1_scaffold_470_12
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11421..11981
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Clostridium sp. MSTE9 RepID=J0N7U4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EJF40567.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
hypothetical protein
L1_008_000M1_scaffold_470_13
Coprococcus sp. ART55/1, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12250..12546)
DNA (297bp) protein (99aa)
Predicted membrane protein n=1 Tax=Coprococcus sp. ART55/1 RepID=D5HE95_9FIRM
Predicted membrane protein
Predicted membrane protein {ECO:0000313|EMBL:CBK83228.1}; TaxID=751585 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. ART55/1.;"
L1_008_000M1_scaffold_470_14
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12539..12901)
DNA (363bp) protein (121aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RSQ6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL71651.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
Predicted transcriptional regulators
L1_008_000M1_scaffold_470_15
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13371..15020
DNA (1650bp) protein (550aa)
ABC transporter n=1 Tax=Clostridium sp. MSTE9 RepID=J0N3A8_9CLOT
ABC transporter {ECO:0000313|EMBL:EJF38872.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
ABC transporter
L1_008_000M1_scaffold_470_16
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15088..15543
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EG82_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEQ57217.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
L1_008_000M1_scaffold_470_17
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15838..17163
DNA (1326bp) protein (442aa)
MATE efflux family protein n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2DT21_CLOS4
MATE efflux family protein {ECO:0000313|EMBL:ERJ00046.1}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
hypothetical protein
L1_008_000M1_scaffold_470_18
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17634..18767)
DNA (1134bp) protein (378aa)
Uncharacterized protein n=1 Tax=Clostridium sp. KLE 1755 RepID=U2BMJ4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI73038.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
hypothetical protein
L1_008_000M1_scaffold_470_19
BJP_IG2069_Clostridiales_48_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18817..19797)
DNA (981bp) protein (327aa)
Uncharacterized protein n=2 Tax=root RepID=R6C8V7_9CLOT
radical SAM protein, TIGR01212 family
Tax=BJP_IG2069_Clostridiales_48_15
L1_008_000M1_scaffold_470_20
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19791..21410)
DNA (1620bp) protein (540aa)
Peptide chain release factor 3 n=1 Tax=Clostridium sp. MSTE9 RepID=J1H5Z6_9CLOT
Peptide chain release factor 3 {ECO:0000256|HAMAP-Rule:MF_00072, ECO:0000256|SAAS:SAAS00089051}; Short=RF-3 {ECO:0000256|HAMAP-Rule:MF_00072};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
prfC; Peptide chain release factor 3
L1_008_000M1_scaffold_470_21
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21644..22102)
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Clostridium sp. KLE 1755 RepID=U2B9J5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHL65819.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
L1_008_000M1_scaffold_470_22
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22089..22421)
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8VYE6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOQ35932.1}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
XRE family transcriptional regulator
L1_008_000M1_scaffold_470_23
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22503..23177)
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:169 RepID=R6CBC0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA62602.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
hypothetical protein
L1_008_000M1_scaffold_470_24
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23437..23661
DNA (225bp) protein (75aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI000368B93F
Uncharacterized protein {ECO:0000313|EMBL:EJF40493.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
hypothetical protein
L1_008_000M1_scaffold_470_25
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23892..24377
DNA (486bp) protein (162aa)
Sigma-70 region 2 n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EH66_9CLOT
Sigma-70 region 2 {ECO:0000313|EMBL:EEG29153.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
sigma-70 family RNA polymerase sigma factor
L1_008_000M1_scaffold_470_26
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24374..25348
DNA (975bp) protein (325aa)
Uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PHQ7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS09025.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
hypothetical protein
L1_008_000M1_scaffold_470_27
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25748..27169
DNA (1422bp) protein (474aa)
Putative efflux protein MATE family n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A781_9CLOT
Putative efflux protein MATE family {ECO:0000313|EMBL:CCX39035.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
MATE efflux family protein
L1_008_000M1_scaffold_470_28
Lachnospiraceae bacterium 28-4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27380..28639
DNA (1260bp) protein (420aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 28-4 RepID=R9J3G9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS28643.1}; TaxID=397287 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 28-4.;"
5-bromo-4-chloroindolyl phosphate hydrolysis protein.
L1_008_000M1_scaffold_470_29
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28820..29983
DNA (1164bp) protein (388aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:242 RepID=R6DHS2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA77427.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
hypothetical protein
L1_008_000M1_scaffold_470_30
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

Not on your lists

30516..32384
DNA (1869bp) protein (623aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6YNY8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD30331.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
hypothetical protein
Displaying items 1-30 of 40 in total

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