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L1_008_000M1_scaffold_3941

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_3941_1
unknown

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3..206
DNA (204bp) protein (68aa)

This feature has no annotations

L1_008_000M1_scaffold_3941_2
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(274..531)
DNA (258bp) protein (86aa)
30S ribosomal protein S15 n=1 Tax=Clostridium sp. CAG:226 RepID=R5B5W4_9CLOT
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
30S ribosomal protein S15
L1_008_000M1_scaffold_3941_3
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(665..1549)
DNA (885bp) protein (295aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
ribC; bifunctional riboflavin kinase/FMN adenylyltransferase (EC:2.7.1.26 2.7.7.2)
Riboflavin biosynthesis protein RibF n=1 Tax=Clostridium sp. CAG:226 RepID=R5BCU4_9CLOT
L1_008_000M1_scaffold_3941_4
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1539..2447)
DNA (909bp) protein (303aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
tRNA pseudouridine synthase B (EC:4.2.1.70)
tRNA pseudouridine synthase B n=1 Tax=Clostridium sp. CAG:226 RepID=R5BGT4_9CLOT
L1_008_000M1_scaffold_3941_5
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2432..3415)
DNA (984bp) protein (328aa)
Phosphoesterase RecJ domain protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B528_9CLOT
Phosphoesterase RecJ domain protein {ECO:0000313|EMBL:CCX50670.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
phosphoesterase, RecJ-like protein
L1_008_000M1_scaffold_3941_6
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3461..3838)
DNA (378bp) protein (126aa)
Ribosome-binding factor A n=1 Tax=Clostridium sp. CAG:226 RepID=R5B8V0_9CLOT
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
ribosome-binding factor A
L1_008_000M1_scaffold_3941_7
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3902..6643)
DNA (2742bp) protein (914aa)
Translation initiation factor IF-2 n=1 Tax=Clostridium sp. CAG:226 RepID=R5B5W0_9CLOT
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
translation initiation factor IF-2
L1_008_000M1_scaffold_3941_8
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6660..6971)
DNA (312bp) protein (104aa)
Ribosomal protein L7Ae/L30e/S12e/Gadd45 n=1 Tax=Clostridium sp. CAG:226 RepID=R5BCT9_9CLOT
Ribosomal protein L7Ae/L30e/S12e/Gadd45 {ECO:0000313|EMBL:CCX50667.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
hypothetical protein
L1_008_000M1_scaffold_3941_9
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6964..7233)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5BGT2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX50666.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
hypothetical protein
L1_008_000M1_scaffold_3941_10
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7254..8336)
DNA (1083bp) protein (361aa)
Transcription termination factor NusA n=1 Tax=Clostridium sp. CAG:226 RepID=R5B523_9CLOT
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
nusA; transcription elongation factor NusA
L1_008_000M1_scaffold_3941_11
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8390..8863)
DNA (474bp) protein (158aa)
Ribosome maturation factor RimP n=1 Tax=Clostridium sp. CAG:226 RepID=R5B8U7_9CLOT
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
hypothetical protein
L1_008_000M1_scaffold_3941_12
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9048..9221)
DNA (174bp) protein (58aa)
DNA polymerase III PolC-type {ECO:0000256|HAMAP-Rule:MF_00356}; Short=PolIII {ECO:0000256|HAMAP-Rule:MF_00356};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00356};; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
DNA polymerase III polC-type n=1 Tax=Clostridium sp. CAG:226 RepID=R5B5V5_9CLOT
DNA polymerase III subunit alpha
Displaying 12 items

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