ggKbase home page

L1_008_000M1_scaffold_1775

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1775_1
unknown

Not on your lists

comp(247..465)
DNA (219bp) protein (73aa)

This feature has no annotations

L1_008_000M1_scaffold_1775_2
unknown

Not on your lists

comp(511..924)
DNA (414bp) protein (138aa)

This feature has no annotations

L1_008_000M1_scaffold_1775_3
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(975..1712)
DNA (738bp) protein (246aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6T991_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC68780.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
hypothetical protein
L1_008_000M1_scaffold_1775_4
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1893..2750
DNA (858bp) protein (286aa)
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GLQ5_9FIRM
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:CDB26403.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
putative RNA polymerase ECF subfamily sigma factor
L1_008_000M1_scaffold_1775_5
unknown

Not on your lists

comp(2583..2987)
DNA (405bp) protein (135aa)

This feature has no annotations

L1_008_000M1_scaffold_1775_6
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2984..9061)
DNA (6078bp) protein (2026aa)
wapA1; tRNA(Glu)-specific nuclease WapA (EC:3.1.-.-)
hypothetical protein n=1 Tax=Clostridium tunisiense RepID=UPI0003812496
Pretoxin HINT domain protein {ECO:0000313|EMBL:EJF39170.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
L1_008_000M1_scaffold_1775_7
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9396..11666
DNA (2271bp) protein (757aa)
Uncharacterized protein n=1 Tax=Dorea sp. 5-2 RepID=R9NFH2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS82059.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
helicase domain protein
L1_008_000M1_scaffold_1775_8
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12588..12884
DNA (297bp) protein (99aa)
mRNA interferase {ECO:0000256|PIRNR:PIRNR033490}; EC=3.1.-.- {ECO:0000256|PIRNR:PIRNR033490};; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
mRNA interferase n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6H085_9FIRM
Growth inhibitor
L1_008_000M1_scaffold_1775_9
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13095..13253
DNA (159bp) protein (53aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GYF7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB26281.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
L1_008_000M1_scaffold_1775_10
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

Not on your lists

13291..14259
DNA (969bp) protein (323aa)
Site-specific recombinases DNA invertase Pin homologs n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D7J6_9FIRM
Site-specific recombinases DNA invertase Pin homologs {ECO:0000313|EMBL:CCX72817.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
Site-specific recombinases, DNA invertase Pin homologs
L1_008_000M1_scaffold_1775_11
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

Not on your lists

14207..14455
DNA (249bp) protein (83aa)
Site-specific recombinases DNA invertase Pin homologs n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D7J6_9FIRM
Site-specific recombinases DNA invertase Pin homologs {ECO:0000313|EMBL:CCX72817.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
Site-specific recombinases, DNA invertase Pin homologs
L1_008_000M1_scaffold_1775_12
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

Not on your lists

14459..14767
DNA (309bp) protein (103aa)
Site-specific recombinases DNA invertase Pin homologs n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D7J6_9FIRM
Site-specific recombinases DNA invertase Pin homologs {ECO:0000313|EMBL:CCX72817.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
Site-specific recombinases, DNA invertase Pin homologs
L1_008_000M1_scaffold_1775_13
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15044..15673
DNA (630bp) protein (210aa)
Redox-sensing transcriptional repressor Rex n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GZY8_9FIRM
Redox-sensing transcriptional repressor Rex {ECO:0000256|HAMAP-Rule:MF_01131}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
rex; redox-sensing transcriptional repressor Rex
L1_008_000M1_scaffold_1775_14
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15755..15895
DNA (141bp) protein (47aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GPC0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB27293.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
hypothetical protein
L1_008_000M1_scaffold_1775_15
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16056..17573)
DNA (1518bp) protein (506aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6HMZ0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB27292.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
carbon starvation protein
L1_008_000M1_scaffold_1775_16
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18062..18376
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6H1B7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB27291.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
hypothetical protein
L1_008_000M1_scaffold_1775_17
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18373..19110
DNA (738bp) protein (246aa)
putative methyltransferase (EC:2.1.1.-)
Methyltransferase domain protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GS60_9FIRM
Methyltransferase domain protein {ECO:0000313|EMBL:CDB27290.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
L1_008_000M1_scaffold_1775_18
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19127..20014
DNA (888bp) protein (296aa)
33 kDa chaperonin n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GZY4_9FIRM
33 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00117, ECO:0000256|SAAS:SAAS00038673}; Heat shock protein 33 homolog {ECO:0000256|HAMAP-Rule:MF_00117}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
hslO; 33 kDa chaperonin
L1_008_000M1_scaffold_1775_19
unknown

Not on your lists

comp(20127..20270)
DNA (144bp) protein (48aa)

This feature has no annotations

L1_008_000M1_scaffold_1775_20
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20876..21334
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6H1C5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB27296.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
L1_008_000M1_scaffold_1775_21
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

22152..22385
DNA (234bp) protein (78aa)
Transcriptional regulator TetR family n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LRC7_9FIRM
Transcriptional regulator TetR family {ECO:0000313|EMBL:CDB88460.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
L1_008_000M1_scaffold_1775_22
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

22430..23095
DNA (666bp) protein (222aa)
undecaprenyl-phosphate galactose phosphotransferase (EC:2.7.8.6)
MW0103 n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LXP4_9FIRM
MW0103 {ECO:0000313|EMBL:CDB88459.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
L1_008_000M1_scaffold_1775_23
GWF2_Clostridiales_38_85_curated, Clostridiales, Bacteria

Not on your lists

23149..24366
DNA (1218bp) protein (406aa)
Capsular polysaccharide synthesis enzyme Cap5L id=4390429 bin=GWF2_Clostridiales_38_85 species=Bacillus alcalophilus genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Clostridiales_38_85 organism_group=Firmicute organism_desc=a212
capsular polysaccharide synthesis enzyme Cap5L
Tax=GWF2_Clostridiales_38_85_curated
L1_008_000M1_scaffold_1775_24

Not on your lists

24483..30197
DNA (5715bp) protein (1905aa)
UPI0003D63BAE related cluster n=1 Tax=unknown RepID=UPI0003D63BAE
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:ETJ20211.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
LPXTG-motif cell wall anchor domain-containing protein
Displaying 24 items

View Taxonomy