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L1_008_000M1_scaffold_394

Search features with annotation key words

Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_394_1
Eubacterium sp. CAG:156, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(203..673)
DNA (471bp) protein (157aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039794}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039776};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=1262880 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:156.;"
Ribosomal RNA large subunit methyltransferase H n=1 Tax=Eubacterium sp. CAG:156 RepID=R5YQF0_9FIRM
rRNA large subunit methyltransferase
L1_008_000M1_scaffold_394_2
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(737..2680)
DNA (1944bp) protein (648aa)
ATP-dependent metalloprotease FtsH (EC:3.6.4.6)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
ATP-dependent zinc metalloprotease FtsH n=7 Tax=Clostridium thermocellum RepID=A3DHM6_CLOTH
L1_008_000M1_scaffold_394_3
[Clostridium] stercorarium, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2935..4236)
DNA (1302bp) protein (434aa)
Collagen-binding domain-containing protein n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VN07_CLOSH
collagen-binding domain-containing protein
Glycoside hydrolase family 101 {ECO:0000313|EMBL:AGC68049.1}; TaxID=1121335 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM; 8532 / NCIMB 11754).;"
L1_008_000M1_scaffold_394_4
Methanolobus tindarius, Methanolobus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(4348..4608)
DNA (261bp) protein (87aa)
UPI0003D1B08D related cluster n=1 Tax=unknown RepID=UPI0003D1B08D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ETA68475.1}; TaxID=1090322 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanolobus.;" source="Methanolobus tindarius DSM 2278.;"
L1_008_000M1_scaffold_394_5
Eubacterium sp. CAG:86, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4736..5698)
DNA (963bp) protein (321aa)
L-lactate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00488}; Short=L-LDH {ECO:0000256|HAMAP-Rule:MF_00488};; EC=1.1.1.27 {ECO:0000256|HAMAP-Rule:MF_00488};; TaxID=1262895 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:86.;"
L-lactate dehydrogenase (EC:1.1.1.27)
L-lactate dehydrogenase n=1 Tax=Eubacterium sp. CAG:86 RepID=R5DR79_9FIRM
L1_008_000M1_scaffold_394_6
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5763..6551)
DNA (789bp) protein (263aa)
Zinc/iron permease n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JPM2_CELLD
zinc/iron permease
Zinc/iron permease {ECO:0000313|EMBL:ADZ83682.1}; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
L1_008_000M1_scaffold_394_7
Clostridium sp. FS41, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6583..7164)
DNA (582bp) protein (194aa)
Desulfoferrodoxin {ECO:0000313|EMBL:KJJ70442.1}; EC=1.15.1.2 {ECO:0000313|EMBL:KJJ70442.1};; TaxID=1609975 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. FS41.;"
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HH10_9CLOT
helix-turn-helix domain-containing protein
L1_008_000M1_scaffold_394_8
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7313..8368)
DNA (1056bp) protein (352aa)
Putative maltose O-acetyltransferase n=1 Tax=Clostridium sp. KLE 1755 RepID=U2B5M1_9CLOT
Putative maltose O-acetyltransferase {ECO:0000313|EMBL:ERI67088.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
maltose O-acetyltransferase
L1_008_000M1_scaffold_394_9
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

comp(8377..9003)
DNA (627bp) protein (209aa)
Uncharacterized protein YigZ family n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MJ49_9FIRM
Uncharacterized protein YigZ family {ECO:0000313|EMBL:CDB99663.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
hypothetical protein
L1_008_000M1_scaffold_394_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9230..10114
DNA (885bp) protein (295aa)
Metallo-beta-lactamase superfamily protein n=1 Tax=Clostridium difficile CD69 RepID=T3AAF2_CLODI
metallo-beta-lactamase superfamily exported protein
Metallo-beta-lactamase superfamily protein {ECO:0000313|EMBL:EQG78195.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L1_008_000M1_scaffold_394_11
[Clostridium] cellulolyticum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10370..11062
DNA (693bp) protein (231aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) RepID=B8I1P7_CLOCE
transcriptional regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ACL77682.1}; TaxID=394503 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 /; H10).;"
L1_008_000M1_scaffold_394_12
unknown

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11261..11740
DNA (480bp) protein (160aa)

This feature has no annotations

L1_008_000M1_scaffold_394_13
unknown

Not on your lists

11740..12048
DNA (309bp) protein (103aa)

This feature has no annotations

L1_008_000M1_scaffold_394_14
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12045..12767
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8BRS0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD17186.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
L1_008_000M1_scaffold_394_15
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

12843..14204
DNA (1362bp) protein (454aa)
MATE efflux family protein n=2 Tax=root RepID=R6M2E0_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:CDB93823.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
MATE efflux family protein
L1_008_000M1_scaffold_394_16
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14266..15210
DNA (945bp) protein (315aa)
Hydrolase, alpha/beta domain protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2JRX0_9FIRM
Hydrolase, alpha/beta domain protein {ECO:0000313|EMBL:ERJ89011.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Lysophospholipase
L1_008_000M1_scaffold_394_17
Clostridium sp. L2-50, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15481..15891
DNA (411bp) protein (137aa)
Predicted ring-cleavage extradiol dioxygenase (EC:4.4.1.5)
Glyoxalase family protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VI48_9CLOT
Glyoxalase family protein {ECO:0000313|EMBL:EDO56907.1}; TaxID=411489 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. L2-50.;"
L1_008_000M1_scaffold_394_18
Roseburia sp. CAG:303, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16384..17271)
DNA (888bp) protein (296aa)
thioredoxin-disulfide reductase (EC:1.8.1.9)
thioredoxin reductase n=1 Tax=Lachnospiraceae bacterium NK4A179 RepID=UPI0003B3B1AD
Thioredoxin reductase {ECO:0000313|EMBL:CDE55824.1}; TaxID=1262944 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:303.;"
L1_008_000M1_scaffold_394_19
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17282..17593)
DNA (312bp) protein (104aa)
Thioredoxin n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZK83_9FIRM
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
thioredoxin
L1_008_000M1_scaffold_394_20
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(17649..18749)
DNA (1101bp) protein (367aa)
Polysaccharide deacetylase n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C5P7_SPHTD
polysaccharide deacetylase
Polysaccharide deacetylase {ECO:0000313|EMBL:ACZ39449.1}; Flags: Precursor;; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
L1_008_000M1_scaffold_394_21
Thermoanaerobacter kivui, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18770..20221)
DNA (1452bp) protein (484aa)
rho; transcription termination factor Rho (EC:3.6.4.-)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=2325 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacter.;" source="Thermoanaerobacter kivui (Acetogenium kivui).;"
Transcription termination factor Rho n=1 Tax=Thermoanaerobacter ethanolicus CCSD1 RepID=C7IR71_THEET
L1_008_000M1_scaffold_394_22
Clostridium sp. CAG:452, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20231..20878)
DNA (648bp) protein (216aa)
Putative membrane protein required for colicin V production n=1 Tax=Clostridium sp. CAG:452 RepID=R6Y5L8_9CLOT
Putative membrane protein required for colicin V production {ECO:0000313|EMBL:CDD26594.1}; TaxID=1262810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:452.;"
colicin v production protein
L1_008_000M1_scaffold_394_23
BJP_IG2069_Clostridiales_48_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20915..22138)
DNA (1224bp) protein (408aa)
hypothetical protein n=1 Tax=Clostridiales bacterium NK3B98 RepID=UPI0003B6D486
hypothetical protein
Tax=BJP_IG2069_Clostridiales_48_15
L1_008_000M1_scaffold_394_24
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22155..22907)
DNA (753bp) protein (251aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1388761 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="Caldanaerobacter subterraneus subsp. yonseiensis KB-1.;"
truA; tRNA pseudouridine synthase A (EC:5.4.99.12)
tRNA pseudouridine synthase A n=1 Tax=Caldanaerobacter subterraneus subsp. yonseiensis KB-1 RepID=U5CPX3_THEYO
L1_008_000M1_scaffold_394_25
Clostridium sp. HMP27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22909..23718)
DNA (810bp) protein (270aa)
Energy-coupling factor transporter transmembrane protein EcfT n=1 Tax=Clostridium sporogenes ATCC 15579 RepID=J7SXI8_CLOSG
Energy-coupling factor transporter transmembrane protein EcfT {ECO:0000256|HAMAP-Rule:MF_01461}; Short=ECF transporter T component EcfT {ECO:0000256|HAMAP-Rule:MF_01461};; TaxID=1487921 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HMP27.;"
ybaF; cobalt subfamily permease
L1_008_000M1_scaffold_394_26
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23753..24595)
DNA (843bp) protein (281aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
ecfA1; Energy-coupling factor transporter ATP-binding protein EcfA 1 (EC:3.6.3.-)
Cobalt ABC transporter ATP-binding protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7KZN0_9FIRM
L1_008_000M1_scaffold_394_27
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24634..25488)
DNA (855bp) protein (285aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Cobalt ABC transporter, ATP-binding protein n=2 Tax=Eubacterium RepID=B0MNM8_9FIRM
cobalt transport protein ATP-binding subunit
L1_008_000M1_scaffold_394_28
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

comp(25511..26392)
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MKL2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC00183.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
hypothetical protein
L1_008_000M1_scaffold_394_29
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26684..27157
DNA (474bp) protein (158aa)
SsrA-binding protein n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4L0K5_OSCVS
smpB; SsrA-binding protein
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
L1_008_000M1_scaffold_394_30
Lachnospiraceae bacterium A2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27182..27619
DNA (438bp) protein (146aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae bacterium A2 RepID=R9KVU2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS47642.1}; TaxID=397290 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A2.;"
hypothetical protein
Displaying items 1-30 of 54 in total

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