ggKbase home page

L1_008_000M1_scaffold_3147

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_3147_1
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(2..193)
DNA (192bp) protein (64aa)
30S ribosomal protein S10 n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8VSI2_9CLOT
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
hypothetical protein
L1_008_000M1_scaffold_3147_2
unknown

Not on your lists

comp(221..397)
DNA (177bp) protein (59aa)

This feature has no annotations

L1_008_000M1_scaffold_3147_3
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

868..2010
DNA (1143bp) protein (381aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGE9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45753.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
acyltransferase 3
L1_008_000M1_scaffold_3147_4
Firmicutes bacterium CAG:65, Firmicutes, Bacteria

Not on your lists


2035..2886
DNA (852bp) protein (284aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; TaxID=1262994 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:65.;"
dimethyladenosine transferase (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Clostridium sp. CAG:91 RepID=R6WBF0_9CLOT
L1_008_000M1_scaffold_3147_5
Clostridium sp. BNL1100, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2971..3288
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Clostridium sp. BNL1100 RepID=H2JF09_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEY64316.1}; TaxID=755731 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BNL1100.;"
L1_008_000M1_scaffold_3147_6
Thermoanaerobacterium thermosaccharolyticum, Thermoanaerobacterium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

3536..4414
DNA (879bp) protein (293aa)
DNA internalization-related competence protein ComEC/Rec2 n=1 Tax=Thermoanaerobacterium thermosaccharolyticum (strain ATCC 7956 / DSM 571 / NCIB 9385 / NCA 3814) RepID=D9TP71_THETC
DNA internalization-related competence protein ComEC/Rec2
DNA internalization-related competence protein ComEC/Rec2 {ECO:0000313|EMBL:ADL68690.1}; TaxID=580327 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Thermoanaerobacterium.;" source="Thermoanaerobacterium thermosaccharolyticum (strain ATCC 7956 / DSM; 571 / NCIB 9385 / NCA 3814) (Clostridium thermosaccharolyticum).;"
L1_008_000M1_scaffold_3147_7
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4435..5511
DNA (1077bp) protein (359aa)
DNA polymerase III subunit delta n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2D8B9
DNA polymerase III subunit delta
DNA polymerase III, delta subunit {ECO:0000313|EMBL:ABN52272.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
L1_008_000M1_scaffold_3147_8
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5573..6964)
DNA (1392bp) protein (464aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
PpiC-type peptidyl-prolyl cis-trans isomerase n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2C2B2
PpiC-type peptidyl-prolyl cis-trans isomerase
L1_008_000M1_scaffold_3147_9
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

comp(7109..10648)
DNA (3540bp) protein (1180aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
Transcription-repair-coupling factor n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MMT9_9FIRM
transcription-repair coupling factor Mfd
L1_008_000M1_scaffold_3147_10
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10685..11248)
DNA (564bp) protein (188aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:221.;"
pth; peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase n=1 Tax=Clostridium sp. CAG:221 RepID=R6FMS7_9CLOT
L1_008_000M1_scaffold_3147_11
unknown

Not on your lists

comp(11290..11388)
DNA (99bp) protein (33aa)

This feature has no annotations

Displaying 11 items

View Taxonomy