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L1_008_364G1_scaffold_394

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_364G1_scaffold_394_1
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..284)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FUX8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA80191.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L1_008_364G1_scaffold_394_2
unknown

Not on your lists

comp(322..594)
DNA (273bp) protein (91aa)

This feature has no annotations

L1_008_364G1_scaffold_394_3
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(762..2054)
DNA (1293bp) protein (431aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylpyruvate transferase {ECO:0000256|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000256|HAMAP-Rule:MF_00111}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Roseburia sp. CAG:197 RepID=R5Z6J2_9FIRM
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
L1_008_364G1_scaffold_394_4
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2091..2621)
DNA (531bp) protein (177aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
Shikimate kinase (EC:2.7.1.71)
Shikimate kinase n=1 Tax=Roseburia sp. CAG:197 RepID=R5YAC7_9FIRM
L1_008_364G1_scaffold_394_5
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2621..3667)
DNA (1047bp) protein (349aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5YI65_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA24444.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
hypothetical protein
L1_008_364G1_scaffold_394_6
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3734..7279)
DNA (3546bp) protein (1182aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
Transcription-repair-coupling factor n=1 Tax=Roseburia sp. CAG:197 RepID=R5YC30_9FIRM
transcription-repair coupling factor
L1_008_364G1_scaffold_394_7
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7286..7861)
DNA (576bp) protein (192aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase n=1 Tax=Roseburia sp. CAG:197 RepID=R5YSL1_9FIRM
L1_008_364G1_scaffold_394_8
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7917..8189)
DNA (273bp) protein (91aa)
Putative septation protein SpoVG n=1 Tax=Roseburia sp. CAG:197 RepID=R5Z6J7_9FIRM
Putative septation protein SpoVG {ECO:0000256|HAMAP-Rule:MF_00819}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
Uncharacterized protein, involved in the regulation of septum location
L1_008_364G1_scaffold_394_9
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8243..9361)
DNA (1119bp) protein (373aa)
Glucose-1-phosphate adenylyltransferase {ECO:0000256|SAAS:SAAS00083544}; EC=2.7.7.27 {ECO:0000256|SAAS:SAAS00083544};; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
glucose-1-phosphate adenylyltransferase, GlgD subunit (EC:2.7.7.27)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5YAD3_9FIRM
L1_008_364G1_scaffold_394_10
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9358..10632)
DNA (1275bp) protein (425aa)
Glucose-1-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565}; EC=2.7.7.27 {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565};; ADP-glucose pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00624}; ADP-glucose synthase {ECO:0000256|HAMAP-Rule:MF_00624}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
glucose-1-phosphate adenylyltransferase (EC:2.7.7.27)
Glucose-1-phosphate adenylyltransferase n=1 Tax=Roseburia sp. CAG:197 RepID=R5YI69_9FIRM
L1_008_364G1_scaffold_394_11
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10844..12223
DNA (1380bp) protein (460aa)
UDP-N-acetylmuramate--L-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344}; EC=6.3.2.8 {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344};; UDP-N-acetylmuramoyl-L-alanine synthetase {ECO:0000256|HAMAP-Rule:MF_00046}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
UDP-N-acetylmuramate--L-alanine ligase (EC:6.3.2.8)
UDP-N-acetylmuramate--L-alanine ligase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UI71_9FIRM
L1_008_364G1_scaffold_394_12
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12523..13656
DNA (1134bp) protein (378aa)
DnaD and phage-associated domain n=1 Tax=Roseburia sp. CAG:197 RepID=R5Z4V3_9FIRM
DnaD and phage-associated domain {ECO:0000313|EMBL:CDA23852.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
hypothetical protein
L1_008_364G1_scaffold_394_13
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13672..14658
DNA (987bp) protein (329aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5YQY1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA23851.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
replicative DNA helicase loader DnaI
L1_008_364G1_scaffold_394_14
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14735..15916
DNA (1182bp) protein (394aa)
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase n=1 Tax=Roseburia sp. CAG:197 RepID=R5YAB4_9FIRM
Ribose-phosphate pyrophosphokinase {ECO:0000313|EMBL:CDA23850.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
L1_008_364G1_scaffold_394_15
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16054..16668)
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5YGH2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA23849.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
putative hydrolase of HD superfamily
L1_008_364G1_scaffold_394_16
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(16865..17389)
DNA (525bp) protein (175aa)
50S ribosomal protein L17 n=1 Tax=Roseburia sp. CAG:197 RepID=R5Y8R2_9FIRM
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
rplQ; 50S ribosomal protein L17
L1_008_364G1_scaffold_394_17
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17579..18538)
DNA (960bp) protein (320aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
DNA-directed RNA polymerase subunit alpha n=1 Tax=Roseburia sp. CAG:197 RepID=R5Z4U6_9FIRM
DNA-directed RNA polymerase, alpha subunit
L1_008_364G1_scaffold_394_18
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(18581..19174)
DNA (594bp) protein (198aa)
30S ribosomal protein S4 n=1 Tax=Roseburia sp. CAG:197 RepID=R5YQX6_9FIRM
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
SSU ribosomal protein S4P
L1_008_364G1_scaffold_394_19
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(19194..19589)
DNA (396bp) protein (132aa)
30S ribosomal protein S11 n=3 Tax=Eubacterium rectale RepID=C4ZBU4_EUBR3
SSU ribosomal protein S11P
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L1_008_364G1_scaffold_394_20
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(19619..19987)
DNA (369bp) protein (123aa)
30S ribosomal protein S13 n=1 Tax=Roseburia sp. CAG:18 RepID=R5UQN2_9FIRM
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
30S ribosomal protein S13
L1_008_364G1_scaffold_394_21
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20548..20766)
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=6 Tax=Clostridiales RepID=C4ZBU1_EUBR3
translation initiation factor IF-1
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L1_008_364G1_scaffold_394_22
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20806..21600)
DNA (795bp) protein (265aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
methionine aminopeptidase, type I (EC:3.4.11.18)
Methionine aminopeptidase n=1 Tax=Roseburia sp. CAG:197 RepID=R5YGG8_9FIRM
L1_008_364G1_scaffold_394_23
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21603..22247)
DNA (645bp) protein (215aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
Adenylate kinase n=1 Tax=Roseburia sp. CAG:197 RepID=R5Y8Q8_9FIRM
adk; adenylate kinase
L1_008_364G1_scaffold_394_24
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(22323..23639)
DNA (1317bp) protein (439aa)
Protein translocase subunit SecY n=1 Tax=Roseburia sp. CAG:197 RepID=R5Z4U2_9FIRM
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
protein translocase subunit secY/sec61 alpha
L1_008_364G1_scaffold_394_25
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(23639..24079)
DNA (441bp) protein (147aa)
50S ribosomal protein L15 n=1 Tax=Roseburia sp. CAG:197 RepID=R5YQX3_9FIRM
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
LSU ribosomal protein L15P
L1_008_364G1_scaffold_394_26
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(24104..24286)
DNA (183bp) protein (61aa)
50S ribosomal protein L30 n=1 Tax=Roseburia sp. CAG:197 RepID=R5YAA2_9FIRM
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
rpmD; 50S ribosomal protein L30
L1_008_364G1_scaffold_394_27
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(24304..24813)
DNA (510bp) protein (170aa)
30S ribosomal protein S5 n=1 Tax=Roseburia sp. CAG:18 RepID=R5V3U4_9FIRM
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
SSU ribosomal protein S5P
L1_008_364G1_scaffold_394_28
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(24826..25194)
DNA (369bp) protein (123aa)
50S ribosomal protein L18 n=1 Tax=Roseburia sp. CAG:18 RepID=R5VBI4_9FIRM
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
LSU ribosomal protein L18P
L1_008_364G1_scaffold_394_29
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(25214..25753)
DNA (540bp) protein (180aa)
50S ribosomal protein L6 n=4 Tax=Eubacterium RepID=D4JL78_9FIRM
LSU ribosomal protein L6P
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L1_008_364G1_scaffold_394_30
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(25851..26255)
DNA (405bp) protein (135aa)
30S ribosomal protein S8 n=1 Tax=Roseburia sp. CAG:18 RepID=R5UIJ1_9FIRM
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Ribosomal protein S8
Displaying items 1-30 of 41 in total

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