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L2_021_000G1_scaffold_36

Search features with annotation key words

Displaying items 1-30 of 129 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_021_000G1_scaffold_36_1
unknown

Not on your lists

1..84
DNA (84bp) protein (28aa)

This feature has no annotations

L2_021_000G1_scaffold_36_2
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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186..1082
DNA (897bp) protein (299aa)
Glycine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00254, ECO:0000256|SAAS:SAAS00104892}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00254, ECO:0000256|SAAS:SAAS00104898};; Glycyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00254}; TaxID=1051657 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei M36.;"
Glycine--tRNA ligase alpha subunit n=37 Tax=Lactobacillus casei group RepID=SYGA_LACC3
glyQ; glycyl-tRNA synthetase subunit alpha
L2_021_000G1_scaffold_36_3
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

1084..3153
DNA (2070bp) protein (690aa)
Glycine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039777}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039811};; Glycyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00255}; TaxID=1226298 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei JCM 8130.;"
Glycine--tRNA ligase beta subunit n=5 Tax=Lactobacillus casei group RepID=SYGB_LACC3
glycyl-tRNA synthetase subunit beta
L2_021_000G1_scaffold_36_4
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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3346..5133
DNA (1788bp) protein (596aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=1226298 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei JCM 8130.;"
DNA primase n=5 Tax=Lactobacillus casei group RepID=Q038U4_LACC3
DNA primase
L2_021_000G1_scaffold_36_5
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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5147..6415
DNA (1269bp) protein (423aa)
RNA polymerase sigma factor SigA n=44 Tax=Lactobacillus RepID=B3WEK4_LACCB
RNA polymerase sigma-70 subunit RpoD
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=537973 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei 8700:2.;"
L2_021_000G1_scaffold_36_6
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

6631..7341
DNA (711bp) protein (237aa)
Predicted SAM-dependent methyltransferase n=6 Tax=Lactobacillus casei group RepID=Q038U6_LACC3
SAM-dependent methyltransferase
SAM-dependent methyltransferase {ECO:0000313|EMBL:EPC59253.1}; TaxID=1256204 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei Lpp14.;"
L2_021_000G1_scaffold_36_7
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

7328..8122
DNA (795bp) protein (265aa)
Putative GTP cyclohydrolase 1 type 2 {ECO:0000256|RuleBase:RU004385}; EC=3.5.4.16 {ECO:0000256|RuleBase:RU004385};; GTP cyclohydrolase I {ECO:0000256|RuleBase:RU004385}; TaxID=1256225 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei Lpp225.;"
Putative GTP cyclohydrolase 1 type 2 n=5 Tax=Lactobacillus casei group RepID=Q038U7_LACC3
hypothetical protein
L2_021_000G1_scaffold_36_8
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

8265..8453
DNA (189bp) protein (63aa)
4-oxalocrotonate tautomerase (EC:5.-.-.- 5.3.2.-)
Tautomerase {ECO:0000256|RuleBase:RU362032}; EC=5.3.2.- {ECO:0000256|RuleBase:RU362032};; TaxID=1378069 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei 5b.;"
4-oxalocrotonate tautomerase n=38 Tax=Lactobacillus casei group RepID=C5F5C1_LACPA
L2_021_000G1_scaffold_36_9
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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8505..8855
DNA (351bp) protein (117aa)
MIP18 family protein yitW n=51 Tax=Lactobacillus casei group RepID=K0N8S7_LACCA
Metal-sulfur cluster biosynthetic enzyme
Putative aromatic ring hydroxylating enzyme {ECO:0000313|EMBL:EKQ02650.1}; TaxID=1051651 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei 21/1.;"
L2_021_000G1_scaffold_36_10
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

8948..9691
DNA (744bp) protein (248aa)
Predicted SAM-dependent methyltransferase n=6 Tax=Lactobacillus casei group RepID=Q038V0_LACC3
SAM-dependent methyltransferase
SAM-dependent methyltransferase {ECO:0000313|EMBL:EPC59249.1}; TaxID=1256204 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei Lpp14.;"
L2_021_000G1_scaffold_36_11
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

9744..10700
DNA (957bp) protein (319aa)
Uncharacterized conserved membrane protein n=32 Tax=Lactobacillus casei group RepID=B3WEJ7_LACCB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EPC90747.1}; TaxID=1256213 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei Lpp49.;"
L2_021_000G1_scaffold_36_12
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

10687..12018
DNA (1332bp) protein (444aa)
tRNA and rRNA cytosine-C5-methylase n=8 Tax=Lactobacillus casei group RepID=Q038V2_LACC3
tRNA and rRNA cytosine-C5-methylase
NOL1/NOP2/sun family protein {ECO:0000313|EMBL:EEI67399.1}; TaxID=525337 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei ATCC 25302.;"
L2_021_000G1_scaffold_36_13
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(12507..13541)
DNA (1035bp) protein (345aa)
isopentenyl pyrophosphate isomerase (EC:5.3.3.2)
Isopentenyl-diphosphate delta-isomerase {ECO:0000256|HAMAP-Rule:MF_00354}; Short=IPP isomerase {ECO:0000256|HAMAP-Rule:MF_00354};; EC=5.3.3.2 {ECO:0000256|HAMAP-Rule:MF_00354};; Isopentenyl diphosphate:dimethylallyl diphosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00354}; Isopentenyl pyrophosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00354}; Type 2 isopentenyl diphosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00354}; TaxID=1051659 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei UCD174.;"
Isopentenyl-diphosphate delta-isomerase n=11 Tax=Lactobacillus casei group RepID=IDI2_LACC3
L2_021_000G1_scaffold_36_14
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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comp(13507..14511)
DNA (1005bp) protein (335aa)
Mevalonate pyrophosphate decarboxylase n=16 Tax=Lactobacillus casei group RepID=D8GGW1_LACCZ
mevalonate pyrophosphate decarboxylase
Possible diphosphomevalonate decarboxylase {ECO:0000313|EMBL:GAN36971.1}; TaxID=1435038 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei NRIC 0644.;"
L2_021_000G1_scaffold_36_15
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14519..15454)
DNA (936bp) protein (312aa)
Mevalonate kinase {ECO:0000313|EMBL:EEI67403.1}; EC=2.7.1.36 {ECO:0000313|EMBL:EEI67403.1};; TaxID=525337 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei ATCC 25302.;"
Mevalonate kinase n=12 Tax=Lactobacillus casei group RepID=Q038V5_LACC3
mevalonate kinase
L2_021_000G1_scaffold_36_16
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

15805..19344
DNA (3540bp) protein (1180aa)
ATP-dependent helicase/deoxyribonuclease subunit B {ECO:0000255|HAMAP-Rule:MF_01453}; EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_01453};; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_01453};; ATP-dependent helicase/nuclease RexB {ECO:0000255|HAMAP-Rule:MF_01453}; TaxID=321967 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei (strain ATCC 334).;"
ATP-dependent helicase/deoxyribonuclease subunit B n=12 Tax=Lactobacillus casei group RepID=ADDB_LACC3
ATP-dependent nuclease subunit B
L2_021_000G1_scaffold_36_17
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

19341..23045
DNA (3705bp) protein (1235aa)
ATP-dependent helicase/nuclease subunit A {ECO:0000256|HAMAP-Rule:MF_01451, ECO:0000256|SAAS:SAAS00044589}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01451, ECO:0000256|SAAS:SAAS00274943};; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01451, ECO:0000256|SAAS:SAAS00145970};; ATP-dependent helicase/nuclease AddA {ECO:0000256|HAMAP-Rule:MF_01451}; TaxID=1226298 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei JCM 8130.;"
ATP-dependent helicase/nuclease subunit A n=7 Tax=Lactobacillus casei group RepID=D8GGV8_LACCZ
ATP-dependent exoDNAse
L2_021_000G1_scaffold_36_18
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

23084..25870
DNA (2787bp) protein (929aa)
DNA helicase n=12 Tax=Lactobacillus casei group RepID=S6BRM0_LACPA
DNA helicase {ECO:0000313|EMBL:BAN71706.1}; TaxID=1226298 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei JCM 8130.;"
Rad3-related DNA helicase
L2_021_000G1_scaffold_36_19
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(25768..26022)
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Lactobacillus paracasei subsp. paracasei CNCM I-4270 RepID=S2QGR9_LACPA
Uncharacterized protein {ECO:0000313|EMBL:EPC54268.1}; TaxID=1256202 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei CNCM I-4270.;"
thiouridylase
L2_021_000G1_scaffold_36_20
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

26299..26787
DNA (489bp) protein (163aa)
Uncharacterized protein n=49 Tax=Lactobacillus casei group RepID=C5F5D2_LACPA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKQ12052.1}; TaxID=1051653 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei A2-362.;"
L2_021_000G1_scaffold_36_21
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

26842..28017
DNA (1176bp) protein (392aa)
Aminotransferase, class I/II {ECO:0000313|EMBL:EEI67409.1}; EC=2.6.1.- {ECO:0000313|EMBL:EEI67409.1};; TaxID=525337 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei ATCC 25302.;"
Aminotransferase n=9 Tax=Lactobacillus casei group RepID=Q038W0_LACC3
aspartate/tyrosine/aromatic aminotransferase
L2_021_000G1_scaffold_36_22
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

28048..29346
DNA (1299bp) protein (433aa)
Asparagine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453}; EC=6.1.1.22 {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453};; Asparaginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00534}; TaxID=1256198 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei Lpp70.;"
Asparagine--tRNA ligase n=9 Tax=Lactobacillus casei group RepID=SYN_LACC3
asnC; asparaginyl-tRNA synthetase
L2_021_000G1_scaffold_36_23
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

29401..30024
DNA (624bp) protein (208aa)
DNA replication protein dnaD n=55 Tax=Lactobacillus casei group RepID=K0N5B1_LACCA
Chromosome replication initiation protein dnaD
Chromosome replication initiation protein {ECO:0000313|EMBL:EKQ12049.1}; TaxID=1051653 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei A2-362.;"
L2_021_000G1_scaffold_36_24
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

30060..30749
DNA (690bp) protein (230aa)
nth; endonuclease III (EC:4.2.99.18)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=1318635 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei LOCK919.;"
Endonuclease III n=1 Tax=Lactobacillus paracasei subsp. paracasei Lpp120 RepID=S2NN28_LACPA
L2_021_000G1_scaffold_36_25
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

30746..31207
DNA (462bp) protein (154aa)
dCMP deaminase (EC:3.-.-.- 3.5.4.12)
Uncharacterized protein n=47 Tax=Lactobacillus casei group RepID=K0N8R0_LACCA
CMP deaminase {ECO:0000313|EMBL:ERN49988.1}; TaxID=1378069 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei 5b.;"
L2_021_000G1_scaffold_36_26
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(31316..33622)
DNA (2307bp) protein (769aa)
multimodular transpeptidase-transglycosylase / penicillin-binding protein 1A/1B (PBP1) (EC:2.4.1.129 3.4.-.-)
Membrane carboxypeptidase n=10 Tax=Lactobacillus casei group RepID=C5F5D8_LACPA
Carboxypeptidase {ECO:0000313|EMBL:BAN71699.1}; TaxID=1226298 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei JCM 8130.;"
L2_021_000G1_scaffold_36_27
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(33615..34241)
DNA (627bp) protein (209aa)
Holliday junction resolvase RecU {ECO:0000256|HAMAP-Rule:MF_00130, ECO:0000256|SAAS:SAAS00056687}; EC=3.1.22.- {ECO:0000256|HAMAP-Rule:MF_00130, ECO:0000256|SAAS:SAAS00056689};; Holliday junction resolvase RecU; Recombination protein U homolog {ECO:0000256|HAMAP-Rule:MF_00130}; TaxID=1435038 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei NRIC 0644.;"
Holliday junction resolvase RecU n=48 Tax=Lactobacillus casei group RepID=RECU_LACC3
RecU Holliday junction resolvase
L2_021_000G1_scaffold_36_28
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

34308..34883
DNA (576bp) protein (192aa)
UPF0398 protein LCABL_17010 n=45 Tax=Lactobacillus casei group RepID=Y1701_LACCB
hypothetical protein
UPF0398 protein LCAM36_2794 {ECO:0000256|HAMAP-Rule:MF_01575}; TaxID=1051657 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei M36.;"
L2_021_000G1_scaffold_36_29
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

34939..35334
DNA (396bp) protein (132aa)
Cell cycle protein GpsB n=55 Tax=Lactobacillus casei group RepID=GPSB_LACC3
Cell division protein GpsB
Cell cycle protein GpsB {ECO:0000256|HAMAP-Rule:MF_02011, ECO:0000256|SAAS:SAAS00023627}; Guiding PBP1-shuttling protein {ECO:0000256|HAMAP-Rule:MF_02011}; TaxID=1051651 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei 21/1.;"
L2_021_000G1_scaffold_36_30
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

36139..37281
DNA (1143bp) protein (381aa)
Predicted N6-adenine-specific DNA methylase n=11 Tax=Lactobacillus casei group RepID=D8GGU4_LACCZ
N-6 adenine-specific DNA methylase
Putative N6-adenine-specific DNA methylase {ECO:0000313|EMBL:AGP68349.1}; TaxID=1318635 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei LOCK919.;"
Displaying items 1-30 of 129 in total

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