ggKbase home page

L2_037_000M1_scaffold_612

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_037_000M1_scaffold_612_1
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1..276
DNA (276bp) protein (92aa)
Cell wall-binding repeat protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZIN9_9CLOT
Cell wall-binding repeat protein {ECO:0000313|EMBL:CDD40841.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
L2_037_000M1_scaffold_612_2
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

324..893
DNA (570bp) protein (190aa)
RNA polymerase sigma factor n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZBH3_9CLOT
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
RNA polymerase, sigma subunit, SigV
L2_037_000M1_scaffold_612_3
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

890..1885
DNA (996bp) protein (332aa)
Anti-sigma-V factor RsiV domain protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z3T8_9CLOT
Anti-sigma-V factor RsiV domain protein {ECO:0000313|EMBL:CDD40880.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L2_037_000M1_scaffold_612_4
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1902..3917)
DNA (2016bp) protein (672aa)
ABC transporter ATP-binding protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZIS6_9CLOT
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CDD40881.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
ATPase components of ABC transporters with duplicated ATPase domains
L2_037_000M1_scaffold_612_5
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4122..4799
DNA (678bp) protein (226aa)
Redox-sensing transcriptional repressor Rex n=1 Tax=Clostridium sp. CAG:299 RepID=R7ADY1_9CLOT
Redox-sensing transcriptional repressor Rex {ECO:0000256|HAMAP-Rule:MF_01131}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
AT-rich DNA-binding protein
L2_037_000M1_scaffold_612_6
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4796..5164
DNA (369bp) protein (123aa)
Holo-[acyl-carrier-protein] synthase {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00237208}; Short=Holo-ACP synthase {ECO:0000256|HAMAP-Rule:MF_00101};; EC=2.7.8.7 {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00237180};; 4'-phosphopantetheinyl transferase AcpS {ECO:0000256|HAMAP-Rule:MF_00101}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
phosphopantethiene--protein transferase domain (EC:2.7.8.7)
Holo-[acyl-carrier-protein] synthase n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZIT9_9CLOT
L2_037_000M1_scaffold_612_7
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5183..6730
DNA (1548bp) protein (516aa)
YjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region n=4 Tax=Clostridiales RepID=D6DIP6_CLOSC
yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region
YjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region {ECO:0000313|EMBL:CBK77570.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L2_037_000M1_scaffold_612_8
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6706..7923
DNA (1218bp) protein (406aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247};; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
alanine racemase (EC:5.1.1.1)
Alanine racemase n=1 Tax=Clostridium sp. CAG:149 RepID=R5MMH2_9CLOT
L2_037_000M1_scaffold_612_9
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8024..8365
DNA (342bp) protein (114aa)
mRNA interferase {ECO:0000256|PIRNR:PIRNR033490}; EC=3.1.-.- {ECO:0000256|PIRNR:PIRNR033490};; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
mRNA interferase n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZAP9_9CLOT
transcriptional modulator of MazE/toxin MazF
L2_037_000M1_scaffold_612_10
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8525..9886
DNA (1362bp) protein (454aa)
Hemolysins and related proteins containing CBS domains n=1 Tax=Clostridium cf. saccharolyticum K10 RepID=D6DIP7_CLOSC
Hemolysins and related proteins containing CBS domains
Hemolysins and related proteins containing CBS domains {ECO:0000313|EMBL:CBK77571.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L2_037_000M1_scaffold_612_11
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9910..11292
DNA (1383bp) protein (461aa)
MATE efflux family protein n=3 Tax=Clostridium RepID=U2D995_CLOSY
MATE efflux family protein {ECO:0000313|EMBL:ERI76081.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
mate efflux family protein
L2_037_000M1_scaffold_612_12
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11425..12153
DNA (729bp) protein (243aa)
Probable transcriptional regulatory protein CLS_20940 n=3 Tax=Clostridium RepID=D6DIP8_CLOSC
conserved hypothetical protein TIGR01033
Probable transcriptional regulatory protein CLOM621_06298 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
L2_037_000M1_scaffold_612_13
Branchiostoma floridae, Branchiostoma, Chordata, Metazoa

Not on your lists

12674..13261
DNA (588bp) protein (196aa)
Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3Z4V3_BRAFL
Putative uncharacterized protein {ECO:0000313|EMBL:EEN52310.1}; TaxID=7739 species="Eukaryota; Metazoa; Chordata; Cephalochordata; Branchiostomidae; Branchiostoma.;" source="Branchiostoma floridae (Florida lancelet) (Amphioxus).;"
hypothetical protein
L2_037_000M1_scaffold_612_14
Desulfitobacterium dehalogenans, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13456..17139
DNA (3684bp) protein (1228aa)
Uncharacterized protein n=1 Tax=Desulfitobacterium dehalogenans (strain ATCC 51507 / DSM 9161 / JW/IU-DC1) RepID=I4A7Q4_DESDJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL99988.1}; Flags: Precursor;; TaxID=756499 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium dehalogenans (strain ATCC 51507 / DSM 9161 /; JW/IU-DC1).;"
L2_037_000M1_scaffold_612_15
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17230..18690)
DNA (1461bp) protein (487aa)
Nicotinate phosphoribosyltransferase {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163}; EC=6.3.4.21 {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163};; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
nicotinate phosphoribosyltransferase (EC:2.4.2.11)
Nicotinate phosphoribosyltransferase n=1 Tax=Clostridium sp. CAG:299 RepID=R7A520_9CLOT
L2_037_000M1_scaffold_612_16
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18882..20486
DNA (1605bp) protein (535aa)
Response regulator receiver domain protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZAC4_9CLOT
Response regulator receiver domain protein {ECO:0000313|EMBL:CDD37856.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
two component transcriptional regulator, AraC family
L2_037_000M1_scaffold_612_17
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20483..22243
DNA (1761bp) protein (587aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Predicted signal transduction protein with a C-terminal ATPase domain (EC:2.7.13.3)
Predicted signal transduction protein with a C-terminal ATPase domain n=1 Tax=Clostridium sp. CAG:299 RepID=R6YVC0_9CLOT
L2_037_000M1_scaffold_612_18
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22230..23207
DNA (978bp) protein (326aa)
Monosaccharide ABC transporter substrate-binding protein CUT2 family (TC 3.A.1.2.-) n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z2M1_9CLOT
Monosaccharide ABC transporter substrate-binding protein CUT2 family (TC 3.A.1.2.-) {ECO:0000313|EMBL:CDD37854.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-)
L2_037_000M1_scaffold_612_19
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23344..24720
DNA (1377bp) protein (459aa)
Monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-) n=2 Tax=Clostridium RepID=D6DLF6_CLOSC
monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-)
Monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-) {ECO:0000313|EMBL:CBK78530.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L2_037_000M1_scaffold_612_20
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24884..26392
DNA (1509bp) protein (503aa)
monosaccharide ABC transporter ATP-binding protein, CUT2 family (TC 3.A.1.2.-) (EC:3.6.3.17)
ABC transporter, ATP-binding protein n=3 Tax=Clostridium RepID=D4CGT7_9CLOT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFE11068.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
L2_037_000M1_scaffold_612_21
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26411..28066
DNA (1656bp) protein (552aa)
Monosaccharide ABC transporter membrane protein, CUT2 family (TC 3.A.1.2.-) n=3 Tax=Clostridium RepID=D6DLF3_CLOSC
monosaccharide ABC transporter membrane protein, CUT2 family (TC 3.A.1.2.-)
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:EFE11067.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
L2_037_000M1_scaffold_612_22
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28609..31746
DNA (3138bp) protein (1046aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02003}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
isoleucyl-tRNA synthetase (EC:6.1.1.5)
Isoleucine--tRNA ligase n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z2L6_9CLOT
L2_037_000M1_scaffold_612_23
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31830..34280
DNA (2451bp) protein (817aa)
Alpha-1,4 glucan phosphorylase {ECO:0000256|RuleBase:RU000587}; EC=2.4.1.1 {ECO:0000256|RuleBase:RU000587};; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
glycogen/starch/alpha-glucan phosphorylases (EC:2.4.1.1)
Phosphorylase n=1 Tax=Clostridium sp. CAG:299 RepID=R6YPE5_9CLOT
L2_037_000M1_scaffold_612_24
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34452..35372
DNA (921bp) protein (307aa)
SpoIID/LytB domain protein n=1 Tax=Clostridium sp. CAG:299 RepID=R7A511_9CLOT
SpoIID/LytB domain protein {ECO:0000313|EMBL:CDD37847.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
SpoIID/LytB domain
L2_037_000M1_scaffold_612_25
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35413..36192
DNA (780bp) protein (260aa)
Peptidase M23 family n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZAB3_9CLOT
Peptidase M23 family {ECO:0000313|EMBL:CDD37846.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
peptidase M23
L2_037_000M1_scaffold_612_26
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36311..36487)
DNA (177bp) protein (59aa)
Transcriptional regulator GntR family n=1 Tax=Clostridium sp. CAG:299 RepID=R6YVB2_9CLOT
Transcriptional regulator GntR family {ECO:0000313|EMBL:CDD37845.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
transcriptional regulator, GntR family
Displaying 26 items

View Taxonomy