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L2_037_000M1_scaffold_714

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_037_000M1_scaffold_714_1
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3..1496
DNA (1494bp) protein (498aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R7AD19_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD40552.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
L2_037_000M1_scaffold_714_2
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1578..1919
DNA (342bp) protein (114aa)
UPF0122 protein BN593_01477 n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZAP2_9CLOT
UPF0122 protein BN593_01477 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L2_037_000M1_scaffold_714_3
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


1956..3314
DNA (1359bp) protein (453aa)
Signal recognition particle protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z336_9CLOT
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
signal recognition particle protein
L2_037_000M1_scaffold_714_4
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


3403..3642
DNA (240bp) protein (80aa)
30S ribosomal protein S16 n=1 Tax=Clostridium sp. CAG:299 RepID=R6YX26_9CLOT
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
SSU ribosomal protein S16P
L2_037_000M1_scaffold_714_5
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3727..3954
DNA (228bp) protein (76aa)
UPF0109 protein CL3_25600 n=5 Tax=Clostridiales RepID=D4MSD7_9FIRM
RNA-binding protein (KH domain)
UPF0109 protein CLS_25270 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L2_037_000M1_scaffold_714_6
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4016..4528
DNA (513bp) protein (171aa)
Ribosome maturation factor RimM n=1 Tax=Clostridium sp. CAG:299 RepID=R7AD44_9CLOT
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
16S rRNA processing protein RimM
L2_037_000M1_scaffold_714_7
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4564..6057
DNA (1494bp) protein (498aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZHY7_9CLOT
tRNA (guanine-N1)-methyltransferase
L2_037_000M1_scaffold_714_8
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


6145..6492
DNA (348bp) protein (116aa)
50S ribosomal protein L19 n=1 Tax=Clostridium sp. CAG:299 RepID=R6YX34_9CLOT
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
ribosomal protein L19, bacterial type
L2_037_000M1_scaffold_714_9
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6597..7511
DNA (915bp) protein (305aa)
Ribosome biogenesis GTPase A n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZAR8_9CLOT
Ribosome biogenesis GTPase A {ECO:0000256|PIRNR:PIRNR006230}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
ribosome biogenesis GTP-binding protein YlqF
L2_037_000M1_scaffold_714_10
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7498..8160
DNA (663bp) protein (221aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Ribonuclease HII (EC:3.1.26.4)
Ribonuclease HII n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z345_9CLOT
L2_037_000M1_scaffold_714_11
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8153..8509
DNA (357bp) protein (119aa)
UPF0102 protein BN593_01486 n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZHZ3_9CLOT
UPF0102 protein BN593_01486 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
conserved hypothetical protein TIGR00252
L2_037_000M1_scaffold_714_12
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8543..9400
DNA (858bp) protein (286aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R7AD52_9CLOT
Laccase domain protein {ECO:0000256|RuleBase:RU361274}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
conserved hypothetical protein TIGR00726
L2_037_000M1_scaffold_714_13
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9550..9753)
DNA (204bp) protein (68aa)
Small acid-soluble spore proteins alpha/beta type n=1 Tax=Clostridium sp. CAG:299 RepID=R6YX36_9CLOT
Small acid-soluble spore proteins alpha/beta type {ECO:0000313|EMBL:CDD40593.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Small, acid-soluble spore proteins, alpha/beta type.
L2_037_000M1_scaffold_714_14
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10053..10619
DNA (567bp) protein (189aa)
RNA methyltransferase RsmD family n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZAS2_9CLOT
RNA methyltransferase RsmD family {ECO:0000313|EMBL:CDD40594.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
RNA methyltransferase, RsmD family
L2_037_000M1_scaffold_714_15
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10643..11164
DNA (522bp) protein (174aa)
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00151}; Pantetheine-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
pantetheine-phosphate adenylyltransferase, bacterial (EC:2.7.7.3)
Phosphopantetheine adenylyltransferase n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z349_9CLOT
L2_037_000M1_scaffold_714_16
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11151..11732
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZHZ8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD40596.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L2_037_000M1_scaffold_714_17
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11707..12603)
DNA (897bp) protein (299aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R7AD56_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD40597.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L2_037_000M1_scaffold_714_18
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12695..13498
DNA (804bp) protein (268aa)
Peptidase M23 family n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZAT0_9CLOT
Peptidase M23 family {ECO:0000313|EMBL:CDD40604.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Membrane proteins related to metalloendopeptidases
L2_037_000M1_scaffold_714_19
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13488..14996
DNA (1509bp) protein (503aa)
tRNA and rRNA cytosine-C5-methylases n=1 Tax=Clostridium cf. saccharolyticum K10 RepID=D6DJQ7_CLOSC
tRNA and rRNA cytosine-C5-methylases
tRNA and rRNA cytosine-C5-methylases {ECO:0000313|EMBL:CBK77931.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L2_037_000M1_scaffold_714_20
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14996..16384
DNA (1389bp) protein (463aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Pseudouridine synthase n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z3A1_9CLOT
pseudouridine synthase family/haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
L2_037_000M1_scaffold_714_21
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16420..18366
DNA (1947bp) protein (649aa)
UPF0313 protein BN593_01496 n=1 Tax=Clostridium sp. CAG:299 RepID=R7ADB8_9CLOT
UPF0313 protein BN593_01496 {ECO:0000256|HAMAP-Rule:MF_01251}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Fe-S oxidoreductase
L2_037_000M1_scaffold_714_22
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18409..19257
DNA (849bp) protein (283aa)
Oxidoreductase short chain dehydrogenase/reductase family protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6YXA3_9CLOT
Oxidoreductase short chain dehydrogenase/reductase family protein {ECO:0000313|EMBL:CDD40688.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Short-chain dehydrogenases of various substrate specificities
L2_037_000M1_scaffold_714_23
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19244..19813
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z3B5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD40690.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L2_037_000M1_scaffold_714_24
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19813..20787
DNA (975bp) protein (325aa)
pseudouridine synthase, RluA family (EC:5.4.99.12)
Pseudouridine synthase, RluA family n=2 Tax=Clostridium RepID=D6DJR2_CLOSC
Pseudouridine synthase RluA family {ECO:0000313|EMBL:CCY87274.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
L2_037_000M1_scaffold_714_25
butyrate-producing bacterium SM4/1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20788..21324
DNA (537bp) protein (179aa)
Holliday junction resolvase RecU {ECO:0000256|HAMAP-Rule:MF_00130, ECO:0000256|SAAS:SAAS00056687}; EC=3.1.22.- {ECO:0000256|HAMAP-Rule:MF_00130, ECO:0000256|SAAS:SAAS00056689};; Recombination protein U homolog {ECO:0000256|HAMAP-Rule:MF_00130}; TaxID=245012 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SM4/1.;"
Holliday junction resolvase RecU n=4 Tax=Clostridiales RepID=D6DJR3_CLOSC
Penicillin-binding protein-related factor A, putative recombinase
L2_037_000M1_scaffold_714_26
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21419..22648
DNA (1230bp) protein (410aa)
peptidase T. Metallo peptidase. MEROPS family M20B (EC:3.4.11.4)
Peptidase T {ECO:0000256|HAMAP-Rule:MF_00550, ECO:0000256|SAAS:SAAS00064331}; EC=3.4.11.4 {ECO:0000256|HAMAP-Rule:MF_00550, ECO:0000256|SAAS:SAAS00064282};; Aminotripeptidase {ECO:0000256|HAMAP-Rule:MF_00550}; Tripeptide aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00550}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
Peptidase T n=1 Tax=Clostridium cf. saccharolyticum K10 RepID=D6DJR4_CLOSC
L2_037_000M1_scaffold_714_27
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22725..24590)
DNA (1866bp) protein (622aa)
asparagine synthase (glutamine-hydrolyzing) (EC:6.3.5.4)
Asparagine synthetase n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZAD0_9CLOT
Asparagine synthetase {ECO:0000313|EMBL:CDD37861.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
L2_037_000M1_scaffold_714_28
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24658..26097)
DNA (1440bp) protein (480aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:149 RepID=R5MJA9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY85122.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
hypothetical protein
L2_037_000M1_scaffold_714_29
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26278..27306
DNA (1029bp) protein (343aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZIG1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD43209.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L2_037_000M1_scaffold_714_30
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27712..28599
DNA (888bp) protein (296aa)
Inosine-uridine preferring nucleoside hydrolase n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z4G9_9CLOT
Inosine-uridine preferring nucleoside hydrolase {ECO:0000313|EMBL:CDD43193.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
inosine/uridine-preferring nucleoside hydrolase
Displaying items 1-30 of 34 in total

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