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L2_037_000M1_scaffold_1465

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_037_000M1_scaffold_1465_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(150..2000)
DNA (1851bp) protein (617aa)
Alpha amylase, catalytic domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNP3_9FIRM
Alpha amylase, catalytic domain protein {ECO:0000313|EMBL:EFB76178.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Glycosidases
L2_037_000M1_scaffold_1465_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2222..4624)
DNA (2403bp) protein (801aa)
Alpha-1,4 glucan phosphorylase {ECO:0000256|RuleBase:RU000587}; EC=2.4.1.1 {ECO:0000256|RuleBase:RU000587};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
glycogen/starch/alpha-glucan phosphorylases (EC:2.4.1.1)
Phosphorylase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNP4_9FIRM
L2_037_000M1_scaffold_1465_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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4877..5254
DNA (378bp) protein (126aa)
Cell division protein ZapA n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNP6_9FIRM
Cell division protein ZapA {ECO:0000256|SAAS:SAAS00072473}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Cell division protein ZapA.
L2_037_000M1_scaffold_1465_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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5251..7326
DNA (2076bp) protein (692aa)
Peptidase, U32 family {ECO:0000313|EMBL:EFB76182.1}; EC=3.4.-.- {ECO:0000313|EMBL:EFB76182.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Collagenase and related proteases (EC:3.4.-.-)
Peptidase, U32 family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNP7_9FIRM
L2_037_000M1_scaffold_1465_5
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7440..7883
DNA (444bp) protein (148aa)
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071038}; Short=dUTPase {ECO:0000256|HAMAP-Rule:MF_00116};; EC=3.6.1.23 {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071036};; dUTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00116}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.6.1.23)
Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZGV7_9FIRM
L2_037_000M1_scaffold_1465_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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8189..8743
DNA (555bp) protein (185aa)
Maf-like protein maf n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNP9_9FIRM
Maf-like protein maf {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
MAF protein
L2_037_000M1_scaffold_1465_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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8824..9843
DNA (1020bp) protein (340aa)
Cell shape determining protein, MreB/Mrl family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNQ0_9FIRM
Cell shape determining protein, MreB/Mrl family {ECO:0000313|EMBL:EFB76185.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
rod shape-determining protein MreB
L2_037_000M1_scaffold_1465_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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9952..10512
DNA (561bp) protein (187aa)
RNA polymerase factor sigma-70 (EC:2.7.7.6)
Putative RNA polymerase sigma-H factor n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNL1_9FIRM
Putative RNA polymerase sigma-H factor {ECO:0000313|EMBL:EFB76146.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L2_037_000M1_scaffold_1465_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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10646..10924
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNL0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76145.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L2_037_000M1_scaffold_1465_10
Firmicutes bacterium CAG:534, Firmicutes, Bacteria

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11027..12463
DNA (1437bp) protein (479aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:534 RepID=R6ZL92_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD46885.1}; TaxID=1263027 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:534.;"
dolichyl-phosphate-mannose-mannosyltransferase family protein
L2_037_000M1_scaffold_1465_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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12534..14789
DNA (2256bp) protein (752aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNK9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76144.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L2_037_000M1_scaffold_1465_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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14823..15029
DNA (207bp) protein (69aa)
Hydrid cluster protein-associated redox disulfide domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNK8_9FIRM
Hydrid cluster protein-associated redox disulfide domain protein {ECO:0000313|EMBL:EFB76143.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L2_037_000M1_scaffold_1465_13
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15016..15690
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H859_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU95891.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
hypothetical protein
L2_037_000M1_scaffold_1465_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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15938..16693
DNA (756bp) protein (252aa)
Putative GTP cyclohydrolase 1 type 2 {ECO:0000256|RuleBase:RU004385}; EC=3.5.4.16 {ECO:0000256|RuleBase:RU004385};; GTP cyclohydrolase I {ECO:0000256|RuleBase:RU004385}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Putative GTP cyclohydrolase 1 type 2 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNK6_9FIRM
conserved hypothetical protein TIGR00486
L2_037_000M1_scaffold_1465_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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16709..18463
DNA (1755bp) protein (585aa)
Fibronectin-binding protein A domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNK5_9FIRM
Fibronectin-binding protein A domain protein {ECO:0000313|EMBL:EFB76140.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Predicted RNA-binding protein homologous to eukaryotic snRNP
L2_037_000M1_scaffold_1465_16
unknown

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18596..19231
DNA (636bp) protein (212aa)

This feature has no annotations

Displaying 16 items

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