ggKbase home page

L2_040_365G1_scaffold_688

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_040_365G1_scaffold_688_1
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2..3415)
DNA (3414bp) protein (1138aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1690 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum subsp. globosum.;"
transcription-repair coupling factor n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B590BE
transcription-repair coupling factor
L2_040_365G1_scaffold_688_2
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3405..4004)
DNA (600bp) protein (200aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=1447715 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum PV8-2.;"
peptidyl-tRNA hydrolase n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B4DD30
peptidyl-tRNA hydrolase
L2_040_365G1_scaffold_688_3
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4089..4598)
DNA (510bp) protein (170aa)
GNAT family acetyltransferase n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B74C96
GNAT family acetyltransferase
GNAT family acetyltransferase {ECO:0000313|EMBL:AIZ16450.1}; TaxID=1447715 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum PV8-2.;"
L2_040_365G1_scaffold_688_4
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4743..7913)
DNA (3171bp) protein (1057aa)
hypothetical protein n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B434A4
UPF0182 protein AH67_05645 {ECO:0000256|HAMAP-Rule:MF_01600}; TaxID=1447715 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum PV8-2.;"
hypothetical protein
L2_040_365G1_scaffold_688_5
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8069..9349
DNA (1281bp) protein (427aa)
Beta-N-acetylhexosaminidase {ECO:0000256|SAAS:SAAS00114579}; EC=3.2.1.52 {ECO:0000256|SAAS:SAAS00114579};; TaxID=1447715 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum PV8-2.;"
beta-lactamase regulatory protein n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B70473
beta-glucosidase
L2_040_365G1_scaffold_688_6
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9356..9571)
DNA (216bp) protein (72aa)
Uncharacterized protein n=16 Tax=Bifidobacterium RepID=B3DSH2_BIFLD
Uncharacterized protein {ECO:0000313|EMBL:KFI77466.1}; TaxID=1690 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum subsp. globosum.;"
hypothetical protein
L2_040_365G1_scaffold_688_7
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9568..11925)
DNA (2358bp) protein (786aa)
Carbon starvation protein A n=1 Tax=Bifidobacterium animalis subsp. animalis (strain ATCC 25527 / DSM 20104 / JCM 1190 / R101-8) RepID=I1WAD9_BIFAR
Carbon starvation protein A {ECO:0000313|EMBL:KFI77467.1}; TaxID=1690 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum subsp. globosum.;"
carbon starvation protein A
L2_040_365G1_scaffold_688_8
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12101..12769)
DNA (669bp) protein (223aa)
Multidrug ABC transporter ATP-binding protein {ECO:0000313|EMBL:KFI77468.1}; EC=3.6.3.42 {ECO:0000313|EMBL:KFI77468.1};; TaxID=1690 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum subsp. globosum.;"
ABC transporter, ATP-binding protein n=2 Tax=Bifidobacterium bifidum RepID=E4VB89_BIFBI
ABC transporter ATP-binding protein
L2_040_365G1_scaffold_688_9
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12785..12991
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Rhodococcus sp. AW25M09 RepID=L8DF19_9NOCA
Uncharacterized protein {ECO:0000313|EMBL:KFI77469.1}; TaxID=1690 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum subsp. globosum.;"
hypothetical protein
L2_040_365G1_scaffold_688_10
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13015..13398)
DNA (384bp) protein (128aa)
Acetyltransferase (GNAT) family n=1 Tax=Roseburia sp. CAG:380 RepID=R6V9W7_9FIRM
Acetyltransferase {ECO:0000313|EMBL:KFI77470.1}; TaxID=1690 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum subsp. globosum.;"
Acetyltransferase (GNAT) family.
L2_040_365G1_scaffold_688_11
Bifidobacterium animalis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13541..14260)
DNA (720bp) protein (240aa)
ABC transporter, ATP-binding protein n=1 Tax=Bifidobacterium animalis subsp. animalis (strain ATCC 25527 / DSM 20104 / JCM 1190 / R101-8) RepID=I1WAE1_BIFAR
ABC transporter ATP-binding protein
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:AFI63223.1}; TaxID=703613 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium animalis subsp. animalis (strain ATCC 25527 / DSM; 20104 / JCM 1190 / R101-8).;"
L2_040_365G1_scaffold_688_12
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14321..14557)
DNA (237bp) protein (79aa)
hypothetical protein n=1 Tax=Succinimonas amylolytica RepID=UPI00037D8D4A
Uncharacterized protein {ECO:0000313|EMBL:KFI77472.1}; TaxID=1690 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum subsp. globosum.;"
antibiotic biosynthesis monooxygenase
L2_040_365G1_scaffold_688_13
Bifidobacterium cuniculi, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14567..16135)
DNA (1569bp) protein (523aa)
Transposase IS605 OrfB n=1 Tax=Arthrobacter gangotriensis Lz1y RepID=M7MUC2_9MICC
Transposase IS605 OrfB {ECO:0000313|EMBL:KFI64608.1}; Flags: Fragment;; TaxID=1688 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium cuniculi.;"
putative transposase
L2_040_365G1_scaffold_688_14
Bifidobacterium cuniculi, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16132..16707)
DNA (576bp) protein (192aa)
Resolvase domain protein n=1 Tax=mine drainage metagenome RepID=T1BN53_9ZZZZ
Acetyltransferase, GNAT family {ECO:0000313|EMBL:KFI66120.1}; TaxID=1688 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium cuniculi.;"
transposon resolvase
L2_040_365G1_scaffold_688_15
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16915..17169)
DNA (255bp) protein (85aa)
Transcriptional regulator n=1 Tax=Bifidobacterium animalis subsp. lactis ATCC 27673 RepID=U3Q534_BIFAN
Transcriptional regulator {ECO:0000313|EMBL:KFI79895.1}; TaxID=31954 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum subsp. pseudolongum.;"
transcriptional regulator
L2_040_365G1_scaffold_688_16
Bifidobacterium animalis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17173..17427)
DNA (255bp) protein (85aa)
Transcriptional regulator n=1 Tax=Bifidobacterium animalis subsp. lactis ATCC 27673 RepID=U3Q534_BIFAN
transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ADC86046.1}; TaxID=552531 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium animalis subsp. lactis (strain BB-12).;"
L2_040_365G1_scaffold_688_17
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17485..17949)
DNA (465bp) protein (155aa)
nucleoside deoxyribosyltransferase n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B6814E
nucleoside 2-deoxyribosyltransferase
Nucleoside 2-deoxyribosyltransferase {ECO:0000313|EMBL:AIZ16453.1}; TaxID=1447715 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum PV8-2.;"
L2_040_365G1_scaffold_688_18
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18089..19546
DNA (1458bp) protein (486aa)
aspA; aspartate ammonia-lyase (EC:4.3.1.1)
Aspartate ammonia-lyase {ECO:0000313|EMBL:AIZ16454.1}; EC=4.3.1.1 {ECO:0000313|EMBL:AIZ16454.1};; TaxID=1447715 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum PV8-2.;"
aspartate ammonia-lyase n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B4FF40
L2_040_365G1_scaffold_688_19
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19642..19947
DNA (306bp) protein (102aa)
iron transporter n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B38AA9
Ferrous iron transport protein A {ECO:0000313|EMBL:KFI77476.1}; TaxID=1690 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum subsp. globosum.;"
hypothetical protein
L2_040_365G1_scaffold_688_20
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19974..22022
DNA (2049bp) protein (683aa)
iron transporter FeoB n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B5BCEB
Iron transporter FeoB {ECO:0000313|EMBL:AIZ16456.1}; TaxID=1447715 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum PV8-2.;"
iron transporter FeoB
L2_040_365G1_scaffold_688_21
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22019..22342
DNA (324bp) protein (108aa)
hypothetical protein n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B75F4F
Peptidase {ECO:0000313|EMBL:KFI77478.1}; TaxID=1690 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum subsp. globosum.;"
hypothetical protein
L2_040_365G1_scaffold_688_22
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22421..23980
DNA (1560bp) protein (520aa)
Glucose-6-phosphate 1-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497}; Short=G6PD {ECO:0000256|HAMAP-Rule:MF_00966};; EC=1.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497};; TaxID=31954 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum subsp. pseudolongum.;"
glucose-6-phosphate 1-dehydrogenase (EC:1.1.1.49)
glucose-6-phosphate 1-dehydrogenase n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B487BC
L2_040_365G1_scaffold_688_23
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23977..24930
DNA (954bp) protein (318aa)
oxidoreductase n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B5C743
OpcA protein
OpcA protein {ECO:0000313|EMBL:AIZ16458.1}; TaxID=1447715 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum PV8-2.;"
L2_040_365G1_scaffold_688_24
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24941..25585
DNA (645bp) protein (215aa)
6-phosphogluconolactonase n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B373F0
6-phosphogluconolactonase
6-phosphogluconolactonase {ECO:0000313|EMBL:AIZ16459.1}; TaxID=1447715 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum PV8-2.;"
Displaying 24 items

View Taxonomy