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L2_047_000M1_scaffold_1061

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_047_000M1_scaffold_1061_1
Parabacteroides sp. 20_3, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3..362)
DNA (360bp) protein (120aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K5ZXH3_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EFK61871.1}; TaxID=469591 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. 20_3.;"
hypothetical protein
L2_047_000M1_scaffold_1061_2
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(382..1584)
DNA (1203bp) protein (401aa)
Uncharacterized protein n=2 Tax=Roseburia RepID=R5HPM5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY31670.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
class I and II aminotransferase
L2_047_000M1_scaffold_1061_3
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2517..4334)
DNA (1818bp) protein (606aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HNK8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY29724.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
ABC transporter
L2_047_000M1_scaffold_1061_4
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4456..4749)
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HJH5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY29723.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
hypothetical protein
L2_047_000M1_scaffold_1061_5
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(5054..5446)
DNA (393bp) protein (131aa)
30S ribosomal protein S9 n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FUJ7_9FIRM
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
rpsI; 30S ribosomal protein S9
L2_047_000M1_scaffold_1061_6
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(5464..5892)
DNA (429bp) protein (143aa)
50S ribosomal protein L13 n=2 Tax=Roseburia RepID=C0FUJ6_9FIRM
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|RuleBase:RU003878}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
rplM; 50S ribosomal protein L13
L2_047_000M1_scaffold_1061_7
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6212..6955)
DNA (744bp) protein (248aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
tRNA pseudouridine synthase A n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FUJ4_9FIRM
tRNA pseudouridine synthase A
L2_047_000M1_scaffold_1061_8
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7014..7826)
DNA (813bp) protein (271aa)
Cobalt transport protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FUJ3_9FIRM
Cobalt transport protein {ECO:0000313|EMBL:EEG93752.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
ABC-type cobalt transport system, permease component CbiQ and related transporters
L2_047_000M1_scaffold_1061_9
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7820..8716)
DNA (897bp) protein (299aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HZ79_9FIRM
ABC-type cobalt transport system, ATPase component
L2_047_000M1_scaffold_1061_10
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8788..9642)
DNA (855bp) protein (285aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
ABC transporter, ATP-binding protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FUJ1_9FIRM
ABC-type cobalt transport system, ATPase component
L2_047_000M1_scaffold_1061_11
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9647..10150)
DNA (504bp) protein (168aa)
Putative tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
Putative tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HJA6_9FIRM
TrmH family RNA methyltransferase
L2_047_000M1_scaffold_1061_12
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10150..11325)
DNA (1176bp) protein (392aa)
Aminotransferase, class I/II {ECO:0000313|EMBL:EEG93748.1}; EC=2.6.1.- {ECO:0000313|EMBL:EEG93748.1};; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
Aminotransferase, class I/II n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FUI9_9FIRM
Aspartate/tyrosine/aromatic aminotransferase
L2_047_000M1_scaffold_1061_13
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11327..11803)
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HYL0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY29842.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
Transcriptional regulators
L2_047_000M1_scaffold_1061_14
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11877..12866)
DNA (990bp) protein (330aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HJS5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY29843.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
hypothetical protein
L2_047_000M1_scaffold_1061_15
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12877..14454)
DNA (1578bp) protein (526aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HNX6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY29844.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
Uncharacterized vancomycin resistance protein
L2_047_000M1_scaffold_1061_16
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14648..14752)
DNA (105bp) protein (35aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HJB2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY29845.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
hypothetical protein
L2_047_000M1_scaffold_1061_17
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14805..15413
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HZ91_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY29846.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
hypothetical protein
L2_047_000M1_scaffold_1061_18
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15416..16141)
DNA (726bp) protein (242aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HYL7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY29847.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
hypothetical protein
L2_047_000M1_scaffold_1061_19
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16135..17889)
DNA (1755bp) protein (585aa)
Fe-S oxidoreductase (EC:4.-.-.-)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HJT0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY29848.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
L2_047_000M1_scaffold_1061_20
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18010..18588)
DNA (579bp) protein (193aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HNY0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY29849.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
hypothetical protein
L2_047_000M1_scaffold_1061_21
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18810..19376)
DNA (567bp) protein (189aa)
Putative dihydroxyacetone kinase regulator n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FUI0_9FIRM
Putative dihydroxyacetone kinase regulator {ECO:0000313|EMBL:EEG93739.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
hypothetical protein
L2_047_000M1_scaffold_1061_22
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19390..20454)
DNA (1065bp) protein (355aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HZ94_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY29851.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
HD-GYP domain
L2_047_000M1_scaffold_1061_23
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20503..20733)
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FUH8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG93737.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
hypothetical protein
L2_047_000M1_scaffold_1061_24
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20858..22456
DNA (1599bp) protein (533aa)
Diguanylate cyclase (GGDEF) domain protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FUH7_9FIRM
Diguanylate cyclase (GGDEF) domain protein {ECO:0000313|EMBL:EEG93736.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
diguanylate cyclase (GGDEF) domain/uncharacterized domain HDIG
L2_047_000M1_scaffold_1061_25
Faecalitalea cylindroides, Faecalitalea, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(22716..23192)
DNA (477bp) protein (159aa)
Uncharacterized protein n=2 Tax=Firmicutes RepID=U2NVQ1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK42130.1}; TaxID=649755 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Faecalitalea.;" source="Faecalitalea cylindroides ATCC 27803.;"
hypothetical protein
L2_047_000M1_scaffold_1061_26
Butyrivibrio crossotus, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23278..23967)
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=D4RXS9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFF69161.1}; TaxID=511680 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio.;" source="Butyrivibrio crossotus DSM 2876.;"
flavin reductase
L2_047_000M1_scaffold_1061_27
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24011..24232)
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FUH3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG93732.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
Plasmid stabilisation system protein.
L2_047_000M1_scaffold_1061_28
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24232..24534)
DNA (303bp) protein (101aa)
Addiction module antitoxin, RelB/DinJ family n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GUW5_9FIRM
addiction module antitoxin, RelB/DinJ family
Addiction module antitoxin, RelB/DinJ family {ECO:0000313|EMBL:CBL41607.1}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
L2_047_000M1_scaffold_1061_29
Coprococcus eutactus, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24589..25560)
DNA (972bp) protein (324aa)
Site-specific recombinase, phage integrase family n=2 Tax=root RepID=A8SQK3_9FIRM
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:EDP26994.1}; TaxID=411474 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus eutactus ATCC 27759.;"
phage integrase family protein
L2_047_000M1_scaffold_1061_30
Acidaminococcus sp. CAG:917, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(25639..26109)
DNA (471bp) protein (157aa)
5-nitroimidazole antibiotic resistance protein n=1 Tax=Acidaminococcus sp. CAG:917 RepID=R7K7T9_9FIRM
5-nitroimidazole antibiotic resistance protein {ECO:0000313|EMBL:CDE72355.1}; TaxID=1262688 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus; environmental samples.;" source="Acidaminococcus sp. CAG:917.;"
5-nitroimidazole antibiotic resistance protein
Displaying 30 items

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