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L2_047_000M1_scaffold_545

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Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_047_000M1_scaffold_545_1
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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618..1799
DNA (1182bp) protein (394aa)
HDOD domain protein n=2 Tax=root RepID=B0MQW8_9FIRM
HDOD domain protein {ECO:0000313|EMBL:EDR99885.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
diguanylate phosphodiesterase
L2_047_000M1_scaffold_545_2
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1856..3214
DNA (1359bp) protein (453aa)
PAS domain S-box/diguanylate cyclase (GGDEF) domain n=2 Tax=root RepID=D4JW02_9FIRM
PAS domain S-box/diguanylate cyclase (GGDEF) domain
PAS domain S-box/diguanylate cyclase (GGDEF) domain {ECO:0000313|EMBL:CBK97271.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_545_3
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3400..3891
DNA (492bp) protein (164aa)
Ribosome maturation factor RimP n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6SBJ8_9FIRM
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
hypothetical protein
L2_047_000M1_scaffold_545_4
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3920..5032
DNA (1113bp) protein (371aa)
Transcription termination factor NusA n=3 Tax=Eubacterium RepID=D4MJE5_9FIRM
transcription termination factor NusA
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L2_047_000M1_scaffold_545_5
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5108..5335
DNA (228bp) protein (76aa)
Predicted nucleic-acid-binding protein implicated in transcription termination n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MJE6_9FIRM
Predicted nucleic-acid-binding protein implicated in transcription termination
Predicted nucleic-acid-binding protein implicated in transcription termination {ECO:0000313|EMBL:CBL33879.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L2_047_000M1_scaffold_545_6
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5341..5646
DNA (306bp) protein (102aa)
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family n=2 Tax=Eubacterium siraeum RepID=D4JW00_9FIRM
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family.
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family {ECO:0000313|EMBL:CBL33880.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L2_047_000M1_scaffold_545_7
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5706..8522
DNA (2817bp) protein (939aa)
Translation initiation factor IF-2 n=4 Tax=root RepID=B0MQX4_9FIRM
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
translation initiation factor IF-2
L2_047_000M1_scaffold_545_8
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8522..8902
DNA (381bp) protein (127aa)
Ribosome-binding factor A n=5 Tax=root RepID=D4MJE8_9FIRM
ribosome-binding factor A
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L2_047_000M1_scaffold_545_9
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8909..9871
DNA (963bp) protein (321aa)
Exopolyphosphatase-related proteins n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JVZ7_9FIRM
Exopolyphosphatase-related proteins
Exopolyphosphatase-related proteins {ECO:0000313|EMBL:CBK97266.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_545_10
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9864..10763
DNA (900bp) protein (300aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
tRNA pseudouridine 55 synthase (EC:5.4.99.12)
tRNA pseudouridine synthase B n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6R7X5_9FIRM
L2_047_000M1_scaffold_545_11
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10760..11689
DNA (930bp) protein (310aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Riboflavin biosynthesis protein RibF n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MQX8_9FIRM
riboflavin biosynthesis protein RibF
L2_047_000M1_scaffold_545_12
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11808..12791
DNA (984bp) protein (328aa)
ABC-type multidrug transport system, ATPase component n=2 Tax=Eubacterium siraeum RepID=D4JVZ5_9FIRM
ABC-type multidrug transport system, ATPase component
ABC-type multidrug transport system, ATPase component {ECO:0000313|EMBL:CBL33884.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L2_047_000M1_scaffold_545_13
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12811..13515
DNA (705bp) protein (235aa)
ABC-2 type transporter n=2 Tax=root RepID=D4JVZ4_9FIRM
ABC-2 type transporter.
ABC-2 type transporter {ECO:0000313|EMBL:CBK97263.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_545_14
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13552..15138
DNA (1587bp) protein (529aa)
ABC-type uncharacterized transport system n=2 Tax=root RepID=D4JVZ3_9FIRM
ABC-type uncharacterized transport system.
ABC-type uncharacterized transport system {ECO:0000313|EMBL:CBK97262.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_545_15
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15153..16631
DNA (1479bp) protein (493aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JVZ2_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK97261.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_545_16

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16739..17017
DNA (279bp) protein (93aa)
Uncharacterized protein n=2 Tax=root RepID=K1U7Z9_9ZZZZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKC76054.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L2_047_000M1_scaffold_545_17
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17152..17658)
DNA (507bp) protein (169aa)
Predicted membrane protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JVZ0_9FIRM
Predicted membrane protein
Predicted membrane protein {ECO:0000313|EMBL:CBK97259.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_545_18
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17955..19139
DNA (1185bp) protein (395aa)
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JVY9_9FIRM
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs {ECO:0000313|EMBL:CBK97258.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_545_19
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19456..21723
DNA (2268bp) protein (756aa)
ABC-type multidrug transport system, ATPase and permease components n=3 Tax=root RepID=D4JVY8_9FIRM
ABC-type multidrug transport system, ATPase and permease components
ABC-type multidrug transport system, ATPase and permease components {ECO:0000313|EMBL:CBK97257.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_545_20
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21741..22274
DNA (534bp) protein (178aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JVY7_9FIRM
Domain of unknown function (DUF1854).
Uncharacterized protein {ECO:0000313|EMBL:CBK97256.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_545_21
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22314..24506
DNA (2193bp) protein (731aa)
ABC-type multidrug transport system, ATPase and permease components n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JVY6_9FIRM
ABC-type multidrug transport system, ATPase and permease components
ABC-type multidrug transport system, ATPase and permease components {ECO:0000313|EMBL:CBK97255.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_545_22
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25326..26645
DNA (1320bp) protein (440aa)
aspartate kinase (EC:2.7.2.4)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
Aspartokinase n=6 Tax=root RepID=D4JVY5_9FIRM
L2_047_000M1_scaffold_545_23
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26825..28039
DNA (1215bp) protein (405aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JVY4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK97253.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_545_24
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28100..28927
DNA (828bp) protein (276aa)
thymidylate synthase (EC:2.1.1.45)
Thymidylate synthase {ECO:0000256|SAAS:SAAS00215270, ECO:0000313|EMBL:CBK97252.1}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00273274};; EC=2.1.1.45 {ECO:0000256|SAAS:SAAS00215290, ECO:0000313|EMBL:CBK97252.1};; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Thymidylate synthase n=3 Tax=root RepID=D4JVY3_9FIRM
L2_047_000M1_scaffold_545_25
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28991..30004
DNA (1014bp) protein (338aa)
Exonuclease n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6S187_9FIRM
Exonuclease {ECO:0000313|EMBL:CDC49076.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
Exonuclease RNase T and DNA polymerase III
L2_047_000M1_scaffold_545_26
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29997..31523
DNA (1527bp) protein (509aa)
Domain of unknown function (DUF303). (EC:3.1.1.53)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JVY2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CBK97251.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_545_27
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31548..33056
DNA (1509bp) protein (503aa)
4-alpha-glucanotransferase (EC:2.4.1.25)
4-alpha-glucanotransferase {ECO:0000256|RuleBase:RU361207, ECO:0000313|EMBL:CBK97250.1}; EC=2.4.1.25 {ECO:0000256|RuleBase:RU361207, ECO:0000313|EMBL:CBK97250.1};; Amylomaltase {ECO:0000256|RuleBase:RU361207}; Disproportionating enzyme {ECO:0000256|RuleBase:RU361207}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
4-alpha-glucanotransferase n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JVY1_9FIRM
L2_047_000M1_scaffold_545_28
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33059..33688
DNA (630bp) protein (210aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Peptidyl-tRNA hydrolase n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JVY0_9FIRM
L2_047_000M1_scaffold_545_29
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33703..37218
DNA (3516bp) protein (1172aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
transcription-repair coupling factor (EC:3.6.1.-)
Transcription-repair-coupling factor n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JVX9_9FIRM
L2_047_000M1_scaffold_545_30
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37211..37705
DNA (495bp) protein (165aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JVX8_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK97247.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Displaying items 1-30 of 32 in total

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