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L2_047_000M1_scaffold_779

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_047_000M1_scaffold_779_1
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(241..1359)
DNA (1119bp) protein (373aa)
Carbohydrate ABC transporter ATP-binding protein CUT1 family (TC 3.A.1.1.-) n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MLU8_9FIRM
Carbohydrate ABC transporter ATP-binding protein CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CDF00707.1}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
carbohydrate ABC transporter ATP-binding protein, CUT1 family (TC 3.A.1.1.-)
L2_047_000M1_scaffold_779_2
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1473..2252)
DNA (780bp) protein (260aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
pseudouridine synthase family (EC:5.4.99.12)
hypothetical protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI00030CF494
L2_047_000M1_scaffold_779_3
Ruminococcus sp. CAG:379, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2296..2727
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:379 RepID=R7AKS9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD54001.1}; TaxID=1262956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:379.;"
hypothetical protein predicted by Glimmer/Critica
L2_047_000M1_scaffold_779_4
Bacillus cereus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(2760..3494)
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Bacillus cereus BAG5X2-1 RepID=J8BS31_BACCE
Uncharacterized protein {ECO:0000313|EMBL:EJQ54415.1}; TaxID=1053191 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group.;" source="Bacillus cereus BAG5X2-1.;"
putative lysozyme
L2_047_000M1_scaffold_779_5
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3518..4285)
DNA (768bp) protein (256aa)
hydrolase, TatD family (EC:3.1.21.-)
hypothetical protein, partial n=1 Tax=Ruminococcus flavefaciens RepID=UPI0003688758
Uncharacterized protein {ECO:0000313|EMBL:EWM52662.1}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
L2_047_000M1_scaffold_779_6
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4278..5336)
DNA (1059bp) protein (353aa)
Transcriptional regulator n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MPN1_9FIRM
Transcriptional regulator {ECO:0000313|EMBL:CDF02620.1}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
Transcriptional regulator
L2_047_000M1_scaffold_779_7
unknown

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comp(5329..5535)
DNA (207bp) protein (69aa)

This feature has no annotations

L2_047_000M1_scaffold_779_8
Ruminococcus sp. CAG:379, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5501..6058)
DNA (558bp) protein (186aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LBJ0_RUMC1
hypothetical protein
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CDD53294.1}; TaxID=1262956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:379.;"
L2_047_000M1_scaffold_779_9
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6562..6939)
DNA (378bp) protein (126aa)
Cellulase (Glycosyl hydrolase family 5) n=1 Tax=Ruminococcus albus 8 RepID=E9S8W4_RUMAL
Cellulase (Glycosyl hydrolase family 5) {ECO:0000313|EMBL:EGC04285.1}; TaxID=246199 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus 8.;"
glycoside hydrolase family protein
L2_047_000M1_scaffold_779_10
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7075..9264)
DNA (2190bp) protein (730aa)
Cellulase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LBF3_9FIRM
Cellulase {ECO:0000313|EMBL:ERJ86819.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
glycoside hydrolase family protein
L2_047_000M1_scaffold_779_11
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9378..10340)
DNA (963bp) protein (321aa)
Glycosyltransferases involved in cell wall biogenesis (EC:3.1.26.3)
Glycosyltransferases involved in cell wall biogenesis n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7GXF8_9FIRM
Glycosyltransferases involved in cell wall biogenesis {ECO:0000313|EMBL:CDE31433.1}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
L2_047_000M1_scaffold_779_12
Ruminococcus sp. CAG:379, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10337..11464)
DNA (1128bp) protein (376aa)
Lysophospholipase L1 and related esterases n=1 Tax=Ruminococcus sp. CAG:379 RepID=R7ALC6_9FIRM
Lysophospholipase L1 and related esterases {ECO:0000313|EMBL:CDD54221.1}; TaxID=1262956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:379.;"
Lysophospholipase L1 and related esterases
L2_047_000M1_scaffold_779_13
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


11852..13792
DNA (1941bp) protein (647aa)
metG; Methionyl-tRNA synthetase (EC:6.1.1.10)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01228}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Methionine--tRNA ligase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TC65_9FIRM
L2_047_000M1_scaffold_779_14
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14349..17888
DNA (3540bp) protein (1180aa)
Pyruvate-flavodoxin oxidoreductase {ECO:0000256|PIRNR:PIRNR000159}; EC=1.2.7.- {ECO:0000256|PIRNR:PIRNR000159};; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
nifJ; Pyruvate-flavodoxin oxidoreductase (EC:1.2.7.-)
Pyruvate-flavodoxin oxidoreductase n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MN70_9FIRM
L2_047_000M1_scaffold_779_15
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18118..18348)
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF356 RepID=N1ZKM3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ14568.1}; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
Helix-turn-helix.
L2_047_000M1_scaffold_779_16
unknown

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18552..18713
DNA (162bp) protein (54aa)

This feature has no annotations

L2_047_000M1_scaffold_779_17
Ruminococcus sp. CAG:579, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19316..20140
DNA (825bp) protein (275aa)
Putative ABC transporter permease protein n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6D1Z4_9FIRM
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=1262963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:579.;"
tagG; ABC transporter membrane component, teichoic acid transport
L2_047_000M1_scaffold_779_18
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20156..20878
DNA (723bp) protein (241aa)
tagH; ABC transporter ATPase component, teichoic acid transport (EC:3.6.3.40)
ABC-type polysaccharide/polyol phosphate transport system ATPase component n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZM1_9FIRM
ABC-type polysaccharide/polyol phosphate transport system ATPase component {ECO:0000313|EMBL:CDC66633.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L2_047_000M1_scaffold_779_19
unknown

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22253..22774
DNA (522bp) protein (174aa)

This feature has no annotations

L2_047_000M1_scaffold_779_20
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22965..23498
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Clostridium perfringens E str. JGS1987 RepID=B1BNQ6_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDT16770.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
L2_047_000M1_scaffold_779_21
unknown

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23509..24054
DNA (546bp) protein (182aa)

This feature has no annotations

L2_047_000M1_scaffold_779_22
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24557..26380
DNA (1824bp) protein (608aa)
GTP-binding protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C37BB1
GTP-binding protein TypA/BipA
GTP-binding protein TypA/BipA {ECO:0000313|EMBL:CBL16548.1}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
L2_047_000M1_scaffold_779_23
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(26523..26837)
DNA (315bp) protein (105aa)
DNA-binding helix-turn-helix protein n=2 Tax=Clostridium hathewayi RepID=D3ABQ4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHI61627.1}; TaxID=742737 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi WAL-18680.;"
hypothetical protein predicted by Glimmer/Critica
L2_047_000M1_scaffold_779_24
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27141..27371
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF356 RepID=N1ZFE5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ14571.1}; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
CI phage repressor protein
Displaying 24 items

View Taxonomy