ggKbase home page

L2_059_052G1_scaffold_109

Search features with annotation key words

Displaying items 1-30 of 84 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_059_052G1_scaffold_109_1
unknown

Not on your lists

comp(114..368)
DNA (255bp) protein (85aa)
Uncharacterized protein n=2 Tax=Escherichia coli RepID=H4VXX8_ECOLX
L2_059_052G1_scaffold_109_2
unknown

Not on your lists

comp(361..498)
DNA (138bp) protein (46aa)

This feature has no annotations

L2_059_052G1_scaffold_109_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(765..2636)
DNA (1872bp) protein (624aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=1444228 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-005-03_S4_C2.;"
Peptidyl-prolyl cis-trans isomerase D n=602 Tax=Enterobacteriaceae RepID=PPID_ECOL6
PpiC-type peptidyl-prolyl cis-trans isomerase
L2_059_052G1_scaffold_109_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2828..3100)
DNA (273bp) protein (91aa)
DNA-binding protein HU-beta n=1404 Tax=Enterobacteriaceae RepID=DBHB_ECO57
hupB; HU, DNA-binding transcriptional regulator subunit beta
DNA-binding protein HU-beta {ECO:0000313|EMBL:KEJ62309.1}; TaxID=1444220 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 3-020-07_S4_C1.;"
L2_059_052G1_scaffold_109_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3309..5663)
DNA (2355bp) protein (785aa)
ATP-dependent protease La (EC:3.4.21.53)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=1444266 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-427-07_S4_C3.;"
Lon protease n=1016 Tax=Enterobacteriaceae RepID=LON_ECOL6
L2_059_052G1_scaffold_109_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5851..7125)
DNA (1275bp) protein (425aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1319 Tax=Enterobacteriaceae RepID=CLPX_ECO24
clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
ATP-dependent Clp protease, ATP-binding subunit ClpX {ECO:0000313|EMBL:ACT30219.1}; TaxID=469008 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain B / BL21-DE3).;"
L2_059_052G1_scaffold_109_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7251..7874)
DNA (624bp) protein (208aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=656420 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli M863.;"
ATP-dependent Clp protease proteolytic subunit n=1418 Tax=Enterobacteriaceae RepID=CLPP_ECO24
clpP; ATP-dependent Clp protease proteolytic subunit
L2_059_052G1_scaffold_109_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8120..9418)
DNA (1299bp) protein (433aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; TaxID=1281011 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 70 (4-2963531).;"
Trigger factor n=224 Tax=Escherichia RepID=TIG_ECOL5
tig; trigger factor
L2_059_052G1_scaffold_109_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9690..10004)
DNA (315bp) protein (105aa)
Protein BolA n=1354 Tax=Enterobacteriaceae RepID=BOLA_ECOL6
bolA; regulator of penicillin binding proteins and beta lactamase transcription (morphogene)
Transcriptional regulator BolA {ECO:0000313|EMBL:AEQ11250.1}; TaxID=1072459 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O7:K1 str. CE10.;"
L2_059_052G1_scaffold_109_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10312..10890
DNA (579bp) protein (193aa)
Uncharacterized lipoprotein n=20 Tax=Enterobacteriaceae RepID=E8Y8N9_ECOKO
putative lipoprotein
Uncharacterized protein {ECO:0000313|EMBL:KDV39296.1}; TaxID=1446599 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O146:H21 str. 2010C-3325.;"
L2_059_052G1_scaffold_109_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10934..12409
DNA (1476bp) protein (492aa)
ampG; muropeptide transporter (EC:2.3.1.-)
Protein ampG n=140 Tax=Escherichia RepID=E2QGH7_ECOLX
Protein AmpG {ECO:0000313|EMBL:EOX01577.1}; TaxID=1181728 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE182.;"
L2_059_052G1_scaffold_109_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12869..13816
DNA (948bp) protein (316aa)
cytochrome o ubiquinol oxidase subunit II (EC:1.10.3.-)
Ubiquinol oxidase, subunit II {ECO:0000313|EMBL:EMU65533.1}; EC=1.10.3.- {ECO:0000313|EMBL:EMU65533.1};; TaxID=1116132 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MP021552.7.;"
Cytochrome o ubiquinol oxidase subunit II n=193 Tax=Escherichia RepID=E2QGH6_ECOLX
L2_059_052G1_scaffold_109_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13838..15829
DNA (1992bp) protein (664aa)
cyoB; cytochrome o ubiquinol oxidase subunit I (EC:1.10.3.-)
Cytochrome o ubiquinol oxidase, subunit I {ECO:0000313|EMBL:EFJ71850.1}; EC=1.10.3.- {ECO:0000313|EMBL:EFJ71850.1};; TaxID=749549 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 198-1.;"
Cytochrome bo(3) ubiquinol oxidase subunit 1 n=1251 Tax=Enterobacteriaceae RepID=CYOB_ECO57
L2_059_052G1_scaffold_109_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15819..16433
DNA (615bp) protein (205aa)
Cytochrome o ubiquinol oxidase, subunit III {ECO:0000313|EMBL:EHU48378.1}; EC=1.10.3.- {ECO:0000313|EMBL:EHU48378.1};; TaxID=868141 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC2D.;"
Cytochrome o ubiquinol oxidase subunit 3 n=94 Tax=Escherichia RepID=E2QGH4_ECOLX
cyoC; Cytochrome o ubiquinol oxidase subunit 3
L2_059_052G1_scaffold_109_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16433..16762
DNA (330bp) protein (110aa)
Cytochrome o ubiquinol oxidase protein cyoD n=225 Tax=Escherichia RepID=E2QGH3_ECOLX
cyoD; cytochrome o ubiquinol oxidase subunit IV
Cytochrome o ubiquinol oxidase CyoD {ECO:0000313|EMBL:EQX32828.1}; TaxID=1281200 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain UMEA 3162-1).;"
L2_059_052G1_scaffold_109_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16774..17664
DNA (891bp) protein (297aa)
cyoE; protoheme IX farnesyltransferase (EC:2.5.1.-)
Protoheme IX farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_00154};; Heme B farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; Heme O synthase {ECO:0000256|HAMAP-Rule:MF_00154}; TaxID=670897 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2362-75.;"
Protoheme IX farnesyltransferase n=188 Tax=Escherichia RepID=CYOE_ECOK1
L2_059_052G1_scaffold_109_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17813..19177
DNA (1365bp) protein (455aa)
Inner membrane transporter yajR n=1 Tax=Escherichia coli HVH 9 (4-6942539) RepID=T5PZY2_ECOLX
yajR; putative MFS superfamily transporter
Inner membrane transport protein yajR {ECO:0000313|EMBL:EZJ54446.1}; TaxID=1444228 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-005-03_S4_C2.;"
L2_059_052G1_scaffold_109_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19305..19796)
DNA (492bp) protein (164aa)
Uncharacterized protein n=6 Tax=Enterobacteriaceae RepID=F4NMI0_9ENTR
hypothetical protein
UPF0234 protein YajQ {ECO:0000256|HAMAP-Rule:MF_00632}; TaxID=1182683 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE76.;"
L2_059_052G1_scaffold_109_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19964..20875
DNA (912bp) protein (304aa)
2-dehydropantoate 2-reductase {ECO:0000256|RuleBase:RU003776}; EC=1.1.1.169 {ECO:0000256|RuleBase:RU003776};; TaxID=1268991 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908519.;"
2-dehydropantoate 2-reductase (EC:1.1.1.169)
2-dehydropantoate 2-reductase n=7 Tax=Escherichia coli RepID=H8D6H7_ECOLX
L2_059_052G1_scaffold_109_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20838..21428
DNA (591bp) protein (197aa)
4-methyl-5(Beta-hydroxyethyl)-thiazole monophosphate synthesis n=862 Tax=Enterobacteriaceae RepID=J7Q6C9_ECOLX
yajL; oxidative-stress-resistance chaperone
Chaperone YajL {ECO:0000313|EMBL:ELE58759.1}; TaxID=1182682 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE75.;"
L2_059_052G1_scaffold_109_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21482..22930)
DNA (1449bp) protein (483aa)
tRNA sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00022963}; EC=2.8.1.4 {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094270};; Sulfur carrier protein ThiS sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021}; Thiamine biosynthesis protein ThiI {ECO:0000256|HAMAP-Rule:MF_00021}; tRNA 4-thiouridine synthase {ECO:0000256|HAMAP-Rule:MF_00021}; tRNA sulfurtransferase; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
tRNA sulfurtransferase n=311 Tax=Escherichia RepID=THII_ECO45
yajK; thiamine biosynthesis protein ThiI
L2_059_052G1_scaffold_109_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23136..23378
DNA (243bp) protein (81aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; TaxID=1444266 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-427-07_S4_C3.;"
Exodeoxyribonuclease 7 small subunit n=1386 Tax=Enterobacteriaceae RepID=EX7S_ECO24
xseB; exonuclease VII small subunit
L2_059_052G1_scaffold_109_23
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23378..24277
DNA (900bp) protein (300aa)
Geranyl transferase {ECO:0000313|EMBL:AIX62141.1}; Geranyltranstransferase {ECO:0000313|EMBL:CKH82098.1}; EC=2.5.1.10 {ECO:0000313|EMBL:CKH82098.1};; IspA {ECO:0000313|EMBL:AJF45004.1}; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
Geranyltranstransferase n=85 Tax=Escherichia RepID=E2QGG5_ECOLX
geranyltranstransferase
L2_059_052G1_scaffold_109_24
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24302..26164
DNA (1863bp) protein (621aa)
1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=1444228 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-005-03_S4_C2.;"
1-deoxy-D-xylulose-5-phosphate synthase n=226 Tax=Escherichia RepID=DXS_ECO7I
L2_059_052G1_scaffold_109_25
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26219..27193
DNA (975bp) protein (325aa)
Uncharacterized oxidoreductase yajO n=3 Tax=Escherichia coli RepID=E2QGG3_ECOLX
aldoketo-oxidoreductase, NADP-binding protein
2-carboxybenzaldehyde reductase {ECO:0000313|EMBL:ELJ76152.1}; TaxID=1169364 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE85.;"
L2_059_052G1_scaffold_109_26
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27247..27765)
DNA (519bp) protein (173aa)
pgpA; phosphatidylglycerophosphatase A (EC:3.1.3.27)
Phosphatidylglycerophosphatase A {ECO:0000256|PIRNR:PIRNR006162}; EC=3.1.3.27 {ECO:0000256|PIRNR:PIRNR006162};; Phosphatidylglycerolphosphate phosphatase A {ECO:0000256|PIRNR:PIRNR006162}; TaxID=1281011 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 70 (4-2963531).;"
Phosphatidylglycerophosphatase A n=314 Tax=Escherichia RepID=E2QGG2_ECOLX
L2_059_052G1_scaffold_109_27
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27743..28720)
DNA (978bp) protein (326aa)
thiamine monophosphate kinase (EC:2.7.4.16)
Thiamine-monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128}; Short=TMP kinase {ECO:0000256|HAMAP-Rule:MF_02128};; Short=Thiamine-phosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128};; EC=2.7.4.16 {ECO:0000256|HAMAP-Rule:MF_02128};; TaxID=1181728 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE182.;"
Thiamine-monophosphate kinase n=56 Tax=Escherichia coli RepID=E2QGG1_ECOLX
L2_059_052G1_scaffold_109_28
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28798..29217)
DNA (420bp) protein (140aa)
N utilization substance protein B homolog n=1421 Tax=Enterobacteriaceae RepID=NUSB_ECO24
nusB; transcription antitermination protein
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; TaxID=1268997 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908555.;"
L2_059_052G1_scaffold_109_29
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29237..29707)
DNA (471bp) protein (157aa)
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; TaxID=766155 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1485-80.;"
6,7-dimethyl-8-ribityllumazine synthase n=1503 Tax=Bacteria RepID=RISB_CITK8
ribH; 6,7-dimethyl-8-ribityllumazine synthase
L2_059_052G1_scaffold_109_30
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29796..30899)
DNA (1104bp) protein (368aa)
ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase (EC:3.5.4.26)
Riboflavin biosynthesis protein RibD n=265 Tax=Escherichia coli RepID=E2QGF8_ECOLX
Riboflavin biosynthesis protein RibD {ECO:0000256|PIRNR:PIRNR006769}; TaxID=1182682 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE75.;"
Displaying items 1-30 of 84 in total

View Taxonomy