ggKbase home page

L2_059_052G1_scaffold_134

Search features with annotation key words

Displaying items 1-30 of 102 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_059_052G1_scaffold_134_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17..226
DNA (210bp) protein (70aa)
Cold shock-like protein CspC n=2241 Tax=Bacteria RepID=CSPC_ECO57
cold-shock protein
Cold-shock DNA-binding domain protein {ECO:0000313|EMBL:EFK12929.1}; TaxID=749538 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 116-1.;"
L2_059_052G1_scaffold_134_2
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

446..2191
DNA (1746bp) protein (582aa)
Peptidoglycan synthetase FtsI n=2 Tax=Citrobacter freundii RepID=K8QNA2_CITFR
Peptidoglycan synthase {ECO:0000313|EMBL:KJC12077.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
peptidoglycan synthase
L2_059_052G1_scaffold_134_3
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2255..3064
DNA (810bp) protein (270aa)
23S rRNA m(1)G745 methyltransferase n=2 Tax=Citrobacter freundii RepID=K8QWD8_CITFR
Ribosomal RNA large subunit methyltransferase A {ECO:0000313|EMBL:ETX71256.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
rrmA; 23S rRNA methyltransferase
L2_059_052G1_scaffold_134_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3061..3627)
DNA (567bp) protein (189aa)
Putative manganese efflux pump MntP n=1 Tax=Citrobacter sp. KTE30 RepID=R8UQI7_9ENTR
Probable manganese efflux pump MntP {ECO:0000256|HAMAP-Rule:MF_01521}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
hypothetical protein
L2_059_052G1_scaffold_134_5
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4060..4518)
DNA (459bp) protein (153aa)
UPF0266 membrane protein HMPREF9428_01729 n=7 Tax=Citrobacter RepID=G9SKJ1_CITFR
UPF0266 membrane protein P834_06975 {ECO:0000256|HAMAP-Rule:MF_01071}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
hypothetical protein
L2_059_052G1_scaffold_134_6
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4579..5430)
DNA (852bp) protein (284aa)
PTS system mannose-specific transporter subunit IID n=6 Tax=Citrobacter RepID=K8QSU8_CITFR
PTS mannose transporter subunit IID {ECO:0000313|EMBL:KJC10256.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
PTS mannose transporter subunit IID
L2_059_052G1_scaffold_134_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5443..6243)
DNA (801bp) protein (267aa)
PTS system, mannose-specific IIC component {ECO:0000313|EMBL:CDL40227.1}; EC=2.7.1.69 {ECO:0000313|EMBL:CDL40227.1};; TaxID=1432557 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ISC11.;"
Mannose permease IIC component n=8 Tax=Citrobacter RepID=C1M5J1_9ENTR
PTS system mannose-specific transporter subunit IIC
L2_059_052G1_scaffold_134_8
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6302..7264)
DNA (963bp) protein (321aa)
PTS system mannose-specific transporter subunits IIAB n=2 Tax=Citrobacter freundii RepID=K8QWD4_CITFR
PTS mannose transporter subunit IIAB {ECO:0000313|EMBL:KJC12071.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
PTS mannose transporter subunit IIAB
L2_059_052G1_scaffold_134_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7724..9283
DNA (1560bp) protein (520aa)
Uncharacterized protein n=2 Tax=Citrobacter RepID=M3CLD9_CITFR
Uncharacterized protein {ECO:0000313|EMBL:KEL81596.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
membrane protein
L2_059_052G1_scaffold_134_10
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9290..10891)
DNA (1602bp) protein (534aa)
Uncharacterized protein n=2 Tax=Citrobacter freundii RepID=K8QLS5_CITFR
Diguanylate phosphodiesterase {ECO:0000313|EMBL:ETX71249.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
c-di-GMP phosphodiesterase
L2_059_052G1_scaffold_134_11
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11022..12368)
DNA (1347bp) protein (449aa)
L-serine ammonia-lyase n=5 Tax=Citrobacter RepID=J1G1X4_9ENTR
Serine dehydratase {ECO:0000313|EMBL:KJC10251.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
serine dehydratase
L2_059_052G1_scaffold_134_12
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12514..13092)
DNA (579bp) protein (193aa)
Uncharacterized Nudix hydrolase NudL {ECO:0000256|HAMAP-Rule:MF_01592, ECO:0000256|SAAS:SAAS00010716}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01592, ECO:0000256|SAAS:SAAS00280366};; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
Uncharacterized Nudix hydrolase NudL n=8 Tax=Citrobacter RepID=C1M5I5_9ENTR
NUDIX hydrolase
L2_059_052G1_scaffold_134_13
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13096..14457)
DNA (1362bp) protein (454aa)
Aminodeoxychorismate synthase {ECO:0000313|EMBL:KJC12066.1}; EC=2.6.1.85 {ECO:0000313|EMBL:KJC12066.1};; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
pabB; aminodeoxychorismate synthase (EC:2.6.1.85)
Uncharacterized protein n=1 Tax=Citrobacter freundii GTC 09479 RepID=M3BM57_CITFR
L2_059_052G1_scaffold_134_14
Citrobacter werkmanii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14541..14720
DNA (180bp) protein (60aa)
UPF0181 protein CSAG_01657 n=8 Tax=Enterobacteriaceae RepID=C1M5I3_9ENTR
hypothetical protein
UPF0181 protein yoaH {ECO:0000256|HAMAP-Rule:MF_00507}; TaxID=1114921 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter werkmanii NBRC 105721.;"
L2_059_052G1_scaffold_134_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14727..15071)
DNA (345bp) protein (115aa)
RutC family protein yoaB n=8 Tax=Citrobacter RepID=C1M5I2_9ENTR
Putative translation initiation inhibitor YoaB {ECO:0000313|EMBL:CDL40237.1}; TaxID=1432557 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ISC11.;"
hypothetical protein
L2_059_052G1_scaffold_134_16
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15212..17122
DNA (1911bp) protein (637aa)
Uncharacterized protein n=7 Tax=Citrobacter RepID=C1M5I1_9ENTR
ATP-dependent helicase {ECO:0000313|EMBL:KJC12063.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
ATP-dependent helicase
L2_059_052G1_scaffold_134_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


17181..17876
DNA (696bp) protein (232aa)
Universal bacterial protein YeaZ n=1 Tax=Citrobacter sp. KTE30 RepID=R8UVG0_9ENTR
tRNA threonylcarbamoyl adenosine modification protein YeaZ {ECO:0000313|EMBL:KEL81604.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
hypothetical protein
L2_059_052G1_scaffold_134_18
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17971..18555
DNA (585bp) protein (195aa)
Slp family outer membrane lipoprotein n=7 Tax=Citrobacter RepID=C1M5H9_9ENTR
Membrane protein {ECO:0000313|EMBL:KJC12061.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
membrane protein
L2_059_052G1_scaffold_134_19
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18694..20445
DNA (1752bp) protein (584aa)
long-chain fatty acid--CoA ligase (EC:6.2.1.3)
Long-chain-fatty-acid-CoA ligase n=2 Tax=Citrobacter RepID=J1G216_9ENTR
Long-chain-fatty-acid-CoA ligase {ECO:0000313|EMBL:ETX71240.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
L2_059_052G1_scaffold_134_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20530..21645
DNA (1116bp) protein (372aa)
Ribonuclease D {ECO:0000256|HAMAP-Rule:MF_01899}; Short=RNase D {ECO:0000256|HAMAP-Rule:MF_01899};; EC=3.1.13.5 {ECO:0000256|HAMAP-Rule:MF_01899};; TaxID=1432557 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ISC11.;"
Ribonuclease D n=4 Tax=Citrobacter RepID=K8QLR9_CITFR
ribonuclease D
L2_059_052G1_scaffold_134_21
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21696..22781)
DNA (1086bp) protein (362aa)
D-malate dehydrogenase [decarboxylating] n=1 Tax=Citrobacter sp. KTE30 RepID=R8URC4_9ENTR
Tartrate dehydrogenase {ECO:0000313|EMBL:KJC12058.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
tartrate dehydrogenase
L2_059_052G1_scaffold_134_22
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22885..23802
DNA (918bp) protein (306aa)
HTH-type transcriptional regulator DmlR n=1 Tax=Citrobacter freundii 4_7_47CFAA RepID=G9SKH0_CITFR
HTH-type transcriptional regulator DmlR {ECO:0000313|EMBL:KDF19308.1}; TaxID=1439318 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii MGH 56.;"
LysR family transcriptional regulator
L2_059_052G1_scaffold_134_23
Salmonella enterica, Salmonella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23889..24155)
DNA (267bp) protein (89aa)
Cell division topological specificity factor n=572 Tax=Enterobacteriaceae RepID=MINE_SALA4
minE; cell division topological specificity factor MinE
Cell division topological specificity factor {ECO:0000256|HAMAP-Rule:MF_00262, ECO:0000256|SAAS:SAAS00085645}; TaxID=1182171 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella.;" source="Salmonella enterica subsp. enterica serovar Braenderup str.; CFSAN000756.;"
L2_059_052G1_scaffold_134_24
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24159..24971)
DNA (813bp) protein (271aa)
Site-determining protein n=9 Tax=Citrobacter RepID=C1M5H0_9ENTR
Site-determining protein {ECO:0000256|PIRNR:PIRNR003092}; TaxID=1439318 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii MGH 56.;"
cell division inhibitor MinD
L2_059_052G1_scaffold_134_25
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24995..25702)
DNA (708bp) protein (236aa)
Probable septum site-determining protein MinC n=2 Tax=Citrobacter RepID=M3DTF2_CITFR
Probable septum site-determining protein MinC {ECO:0000256|HAMAP-Rule:MF_00267}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
minC; septum formation inhibitor
L2_059_052G1_scaffold_134_26
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25829..26122
DNA (294bp) protein (98aa)
YcgL domain-containing protein WYG_2708 n=6 Tax=Citrobacter RepID=J1G1W0_9ENTR
YcgL domain-containing protein P834_06954 {ECO:0000256|HAMAP-Rule:MF_01866}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
hypothetical protein
L2_059_052G1_scaffold_134_27
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26192..26851
DNA (660bp) protein (220aa)
Fumarylacetoacetate hydrolase family protein n=4 Tax=Citrobacter RepID=J0M485_9ENTR
Fumarylacetoacetate (FAA) hydrolase family protein {ECO:0000313|EMBL:KEL81614.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
hypothetical protein
L2_059_052G1_scaffold_134_28
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26944..27390
DNA (447bp) protein (149aa)
UPF0260 protein CSAG_01640 n=7 Tax=Citrobacter RepID=C1M5G6_9ENTR
hypothetical protein
UPF0260 protein P835_02440 {ECO:0000256|HAMAP-Rule:MF_00676}; TaxID=1400137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 32.;"
L2_059_052G1_scaffold_134_29
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27420..27761)
DNA (342bp) protein (114aa)
Uncharacterized protein n=8 Tax=Citrobacter RepID=C1M5G5_9ENTR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHY13682.1}; TaxID=1333848 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii CFNIH1.;"
L2_059_052G1_scaffold_134_30
Citrobacter sp. KTE151, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27872..28402)
DNA (531bp) protein (177aa)
Disulfide bond formation protein B n=4 Tax=Citrobacter RepID=J0LXW1_9ENTR
Disulfide bond formation protein B {ECO:0000256|HAMAP-Rule:MF_00286}; Disulfide oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00286}; TaxID=1169322 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. KTE151.;"
disulfide bond formation protein B
Displaying items 1-30 of 102 in total

View Taxonomy