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L3_068_000M1_scaffold_1692

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_000M1_scaffold_1692_1
unknown

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comp(413..1150)
DNA (738bp) protein (246aa)

This feature has no annotations

L3_068_000M1_scaffold_1692_2
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1303..3111)
DNA (1809bp) protein (603aa)
Glycoside Hydrolase Family 5 protein (EC:3.2.1.4)
Cellulase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KDU4_9FIRM
Cellulase {ECO:0000313|EMBL:ERJ96686.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_068_000M1_scaffold_1692_3
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3308..3994)
DNA (687bp) protein (229aa)
Transcriptional regulator, GntR family n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2MBL4_9FIRM
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ERJ96688.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
GntR family transcriptional regulator
L3_068_000M1_scaffold_1692_4
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4003..4695)
DNA (693bp) protein (231aa)
TIGR00659 family protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M4L9_9FIRM
TIGR00659 family protein {ECO:0000313|EMBL:ERJ96689.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
LrgB family protein
L3_068_000M1_scaffold_1692_5
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4688..5059)
DNA (372bp) protein (124aa)
LrgA family protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KX65_9FIRM
LrgA family protein {ECO:0000313|EMBL:ERJ96690.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
putative effector of murein hydrolase LrgA
L3_068_000M1_scaffold_1692_6
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5206..6585)
DNA (1380bp) protein (460aa)
MATE efflux family protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KDU9_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:ERJ96691.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
MATE efflux family protein
L3_068_000M1_scaffold_1692_7
unknown

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comp(6929..7027)
DNA (99bp) protein (33aa)

This feature has no annotations

L3_068_000M1_scaffold_1692_8
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7352..9676)
DNA (2325bp) protein (775aa)
Putative negative regulator of genetic competence ClpC/MecB n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KWG5_9FIRM
Putative negative regulator of genetic competence ClpC/MecB {ECO:0000313|EMBL:ERJ96622.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
ATPases with chaperone activity, ATP-binding subunit
L3_068_000M1_scaffold_1692_9
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9704..10591)
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2MBF6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ96623.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_068_000M1_scaffold_1692_10
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10595..11764)
DNA (1170bp) protein (390aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M4F2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ96624.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
L3_068_000M1_scaffold_1692_11
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11797..12534)
DNA (738bp) protein (246aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
pseudouridylate synthase I (EC:5.4.99.12)
tRNA pseudouridine synthase A n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KX16_9FIRM
L3_068_000M1_scaffold_1692_12
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12531..15224)
DNA (2694bp) protein (898aa)
Bacterial membrane protein YfhO n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KDP0_9FIRM
Bacterial membrane protein YfhO {ECO:0000313|EMBL:ERJ96626.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Predicted membrane protein
L3_068_000M1_scaffold_1692_13
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15236..16039)
DNA (804bp) protein (268aa)
Cobalt transport protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KWG9_9FIRM
Cobalt transport protein {ECO:0000313|EMBL:ERJ96627.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
ABC-type cobalt transport system, permease component CbiQ and related transporters
L3_068_000M1_scaffold_1692_14
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16033..16908)
DNA (876bp) protein (292aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Cobalt ABC transporter, ATP-binding protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2MBG1_9FIRM
ABC transporter-like protein
L3_068_000M1_scaffold_1692_15
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16923..17771)
DNA (849bp) protein (283aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Cobalt ABC transporter, ATP-binding protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M4F6_9FIRM
cobalt transport protein ATP-binding subunit
L3_068_000M1_scaffold_1692_16
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17824..18042)
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KX21_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ96630.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_068_000M1_scaffold_1692_17
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18088..18957)
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KDP3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ96631.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
L3_068_000M1_scaffold_1692_18
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18986..20362)
DNA (1377bp) protein (459aa)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|SAAS:SAAS00078319}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|SAAS:SAAS00078300};; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
phosphoglucosamine mutase (EC:5.4.2.10)
Phosphoglucosamine mutase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KWH4_9FIRM
L3_068_000M1_scaffold_1692_19
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20470..21540)
DNA (1071bp) protein (357aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2MBG5_9FIRM
Holliday junction DNA helicase, RuvB subunit
L3_068_000M1_scaffold_1692_20
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21561..22181)
DNA (621bp) protein (207aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M4G0_9FIRM
Holliday junction DNA helicase RuvA
Displaying 20 items

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